Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties.
about
Modeling effects of human single nucleotide polymorphisms on protein-protein interactionsHow to find soluble proteins: a comprehensive analysis of alpha/beta hydrolases for recombinant expression in E. coli.Visualizing functional motions of membrane transporters with molecular dynamics simulationsAMPK: a cellular metabolic and redox sensor. A minireviewSubstrate-bound outward-open state of the betaine transporter BetP provides insights into Na+ coupling.High Apparent Dielectric Constant Inside a Protein Reflects Structural Reorganization Coupled to the Ionization of an Internal AspStructural and functional consequences of single amino acid substitutions in the pyrimidine base binding pocket of Escherichia coli CMP kinaseA buried lysine that titrates with a normal pKa: Role of conformational flexibility at the protein-water interface as a determinant of pKavaluesEffect of Mutation of Carboxyl Side-Chain Amino Acids Near the Heme on the Midpoint Potentials and Ligand Binding Constants of Nitrophorin 2 and Its NO, Histamine, and Imidazole ComplexesThe pKa Values of Acidic and Basic Residues Buried at the Same Internal Location in a Protein Are Governed by Different FactorsBlind Prediction of Charged Ligand Binding Affinities in a Model Binding SiteMolecular mechanisms for generating transmembrane proton gradientsQuantifying Correlations Between Allosteric Sites in Thermodynamic EnsemblesChronic Beryllium Disease: revealing the role of beryllium ion and small peptides binding to HLA-DP2pH-Dependent conformational changes in proteins and their effect on experimental pK(a)s: the case of Nitrophorin 4The Mycobacterium tuberculosis LipB enzyme functions as a cysteine/lysine dyad acyltransferaseConformational Dynamics and Binding Free Energies of Inhibitors of BACE-1: From the Perspective of Protonation EquilibriaGMCT : A Monte Carlo simulation package for macromolecular receptorsTanford-Kirkwood electrostatics for protein modeling.Protein dielectric constants determined from NMR chemical shift perturbationsFactors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations.Remeasuring HEWL pK(a) values by NMR spectroscopy: methods, analysis, accuracy, and implications for theoretical pK(a) calculations.Progress in developing Poisson-Boltzmann equation solvers.Thermodynamic linkage between the binding of protons and inhibitors to HIV-1 protease.Ligand preference and orientation in b- and c-type heme-binding proteins.Combining multiple structure and sequence alignments to improve sequence detection and alignment: application to the SH2 domains of Janus kinases.Experimental pK(a) values of buried residues: analysis with continuum methods and role of water penetrationBenchmarking pK(a) prediction.Selective prediction of interaction sites in protein structures with THEMATICS.pH-dependent association of proteins. The test case of monoclonal antibody HyHEL-5 and its antigen hen egg white lysozymeProtein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be.Chemical frustration in the protein folding landscape: grand canonical ensemble simulations of cytochrome c.Structural origins of high apparent dielectric constants experienced by ionizable groups in the hydrophobic core of a proteinAcidic extracellular pH promotes activation of integrin α(v)β(3).Structural analysis of alkaline β-mannanase from alkaliphilic Bacillus sp. N16-5: implications for adaptation to alkaline conditionsConstant pH replica exchange molecular dynamics in biomolecules using a discrete protonation modelDNA recognition by the DNA primase of bacteriophage T7: a structure-function study of the zinc-binding domain.Multiple pH regime molecular dynamics simulation for pK calculations.Computational analysis of missense mutations causing Snyder-Robinson syndromeElectrostatic contributions to the binding free energy of the lambdacI repressor to DNA.
P2860
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P2860
Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties.
description
1997 nî lūn-bûn
@nan
1997 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
1997 թվականի մայիսին հրատարակված գիտական հոդված
@hy
1997年の論文
@ja
1997年論文
@yue
1997年論文
@zh-hant
1997年論文
@zh-hk
1997年論文
@zh-mo
1997年論文
@zh-tw
1997年论文
@wuu
name
Incorporating protein conforma ...... -dependent protein properties.
@ast
Incorporating protein conforma ...... -dependent protein properties.
@en
type
label
Incorporating protein conforma ...... -dependent protein properties.
@ast
Incorporating protein conforma ...... -dependent protein properties.
@en
prefLabel
Incorporating protein conforma ...... -dependent protein properties.
@ast
Incorporating protein conforma ...... -dependent protein properties.
@en
P2860
P1433
P1476
Incorporating protein conforma ...... -dependent protein properties.
@en
P2093
E G Alexov
M R Gunner
P2860
P304
P356
10.1016/S0006-3495(97)78851-9
P407
P577
1997-05-01T00:00:00Z