SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models - Wikidata - awgldk - TriplyDB

SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models

SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models

http://www.wikidata.org/entity/Q30485765

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Leveraging structure for enzyme function prediction: methods, opportunities, and challenges Computational approaches for understanding energy metabolism Modeling Rice Metabolism: From Elucidating Environmental Effects on Cellular Phenotype to Guiding Crop Improvement Microbial bioinformatics for food safety and production Modeling central metabolism and energy biosynthesis across microbial life Genomic and Functional Portrait of a Highly Virulent, CTX-M-15-Producing H30-Rx Subclone of Escherichia coli Sequence Type 131.SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation.FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource Pharmacomicrobiomics: the impact of human microbiome variations on systems pharmacology and personalized therapeutics.A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933.FusoBase: an online Fusobacterium comparative genomic analysis platform.Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition Glycan degradation (GlyDeR) analysis predicts mammalian gut microbiota abundance and host diet-specific adaptations Applying Shannon's information theory to bacterial and phage genomes and metagenomes Draft Genome Sequence of Sphingopyxis sp. Strain MWB1, a Crude-Oil-Degrading Marine Bacterium.Complete Genome Sequence of Pluralibacter gergoviae FB2, an N-Acyl Homoserine Lactone-Degrading Strain Isolated from Packed Fish Paste Interrogation of the Burkholderia pseudomallei genome to address differential virulence among isolates.Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era.Comparative genomic analysis indicates that niche adaptation of terrestrial Flavobacteria is strongly linked to plant glycan metabolism.The search for therapeutic bacteriophages uncovers one new subfamily and two new genera of Pseudomonas-infecting Myoviridae.Genome Sequence of Arthrobacter sp. MWB30, Isolated from a Crude Oil-Contaminated Seashore.RNA shotgun metagenomic sequencing of northern California (USA) mosquitoes uncovers viruses, bacteria, and fungi Prediction and quantification of bioactive microbiota metabolites in the mouse gut.Sequence-based Network Completion Reveals the Integrality of Missing Reactions in Metabolic Networks Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota.Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon.Genome sequencing and comparative analysis of an NDM-1-producing Klebsiella pneumoniae ST15 isolated from a refugee patient.Gut Pharmacomicrobiomics: the tip of an iceberg of complex interactions between drugs and gut-associated microbes Recent progress in the development of metabolome databases for plant systems biology.QnrS1- and Aac(6')-Ib-cr-Producing Escherichia coli among Isolates from Animals of Different Sources: Susceptibility and Genomic Characterization.Genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes.In silico Comparison of 19 Porphyromonas gingivalis Strains in Genomics, Phylogenetics, Phylogenomics and Functional Genomics Biofilm formation in enterococci: genotype-phenotype correlations and inhibition by vancomycin.biochem4j: Integrated and extensible biochemical knowledge through graph databases.Genome sequencing and analysis of Salmonella enterica serovar Typhi strain CR0063 representing a carrier individual during an outbreak of typhoid fever in Kelantan, Malaysia.Viruses-to-mobile genetic elements skew in the deep Atlantis II brine pool sediments.Phylogenetic distribution of potential cellulases in bacteria Comparative genomic analysis of Helicobacter pylori from Malaysia identifies three distinct lineages suggestive of differential evolution.

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P2860

SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models

http://www.wikidata.org/entity/Q30485765

description

2012 nî lūn-bûn

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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SEED servers: high-performance ...... otations, and metabolic models

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SEED servers: high-performance ...... otations, and metabolic models

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SEED servers: high-performance ...... otations, and metabolic models

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SEED servers: high-performance ...... otations, and metabolic models

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SEED servers: high-performance ...... otations, and metabolic models

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Bruce Parrello

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Christopher S Henry

http://www.w3.org/2001/XMLSchema#string

Fangfang Xia

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Gary J Olsen

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Gordon D Pusch

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Rick L Stevens

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Robert A Edwards

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Robert Olson

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Ross Overbeek

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Scott Devoid

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P2860

The RAST Server: rapid annotations using subsystems technology

A flood of microbial genomes-do we need more?

Gene ontology: tool for the unification of biology

UniProt: the Universal Protein knowledgebase

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC)

KEGG Atlas mapping for global analysis of metabolic pathways

The use of gene clusters to infer functional coupling

Genomics: what is realistically achievable?

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

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3480482

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