CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions
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SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applicationsFaster Smith-Waterman database searches with inter-sequence SIMD parallelisation.GHOSTM: a GPU-accelerated homology search tool for metagenomicsParallel mutual information estimation for inferring gene regulatory networks on GPUsOSWALD: OpenCL Smith-Waterman on Alteras FPGA for Large Protein DatabasesParallel implementation of 3D protein structure similarity searches using a GPU and the CUDA.G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods.Protein alignment algorithms with an efficient backtracking routine on multiple GPUsShort Read Mapping: An Algorithmic Tour.A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units.GPU-BSM: a GPU-based tool to map bisulfite-treated reads.GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda.DOPA: GPU-based protein alignment using database and memory access optimizations.Accelerating pairwise statistical significance estimation for local alignment by harvesting GPU's power.Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel.Heterogeneous computing architecture for fast detection of SNP-SNP interactions.CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions.CLAST: CUDA implemented large-scale alignment search toolQuickProbs--a fast multiple sequence alignment algorithm designed for graphics processorsMC64-ClustalWP2: a highly-parallel hybrid strategy to align multiple sequences in many-core architectures.SW#db: GPU-Accelerated Exact Sequence Similarity Database Search.Improving the Mapping of Smith-Waterman Sequence Database Searches onto CUDA-Enabled GPUs.Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clustersAccelerating Smith-Waterman Alignment for Protein Database Search Using Frequency Distance Filtration Scheme Based on CPU-GPU Collaborative System.Pairwise Sequence Alignment for Very Long Sequences on GPUsPrefiltering Model for Homology Detection Algorithms on GPU.HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads.FPGASW: Accelerating Large-Scale Smith-Waterman Sequence Alignment Application with Backtracking on FPGA Linear Systolic Array.Graphics processing units in bioinformatics, computational biology and systems biology.GPU-based cloud service for Smith-Waterman algorithm using frequency distance filtration scheme.Accelerating the Smith-Waterman algorithm with interpair pruning and band optimization for the all-pairs comparison of base sequences.Computing Platforms for Big Biological Data Analytics: Perspectives and Challenges.DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI.A bit-parallel dynamic programming algorithm suitable for DNA sequence alignment.pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment.State-of-the-Art in Smith–Waterman Protein Database Search on HPC Platforms
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P2860
CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions
description
2010 nî lūn-bûn
@nan
2010 թուականի Ապրիլին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի ապրիլին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
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name
CUDASW++2.0: enhanced Smith-Wa ...... virtualized SIMD abstractions
@ast
CUDASW++2.0: enhanced Smith-Wa ...... virtualized SIMD abstractions
@en
type
label
CUDASW++2.0: enhanced Smith-Wa ...... virtualized SIMD abstractions
@ast
CUDASW++2.0: enhanced Smith-Wa ...... virtualized SIMD abstractions
@en
prefLabel
CUDASW++2.0: enhanced Smith-Wa ...... virtualized SIMD abstractions
@ast
CUDASW++2.0: enhanced Smith-Wa ...... virtualized SIMD abstractions
@en
P2093
P2860
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CUDASW++2.0: enhanced Smith-Wa ...... virtualized SIMD abstractions
@en
P2093
Bertil Schmidt
Douglas L Maskell
Yongchao Liu
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P2888
P356
10.1186/1756-0500-3-93
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2010-04-06T00:00:00Z
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P6179
1041106303