Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation.
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MEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin NetworksQuinary protein structure and the consequences of crowding in living cells: leaving the test-tube behind.Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations.SteadyCom: Predicting microbial abundances while ensuring community stabilityGPU-accelerated analysis and visualization of large structures solved by molecular dynamics flexible fitting.ReaDDy--a software for particle-based reaction-diffusion dynamics in crowded cellular environmentsPerspective: Reaches of chemical physics in biology.Spatially-resolved metabolic cooperativity within dense bacterial colonies.Space-induced bifurcation in repression-based transcriptional circuits.Free-Propagator Reweighting Integrator for Single-Particle Dynamics in Reaction-Diffusion Models of Heterogeneous Protein-Protein Interaction Systems.Free energetics of carbon nanotube association in aqueous inorganic NaI salt solutions: Temperature effects using all-atom molecular dynamics simulations.A biophysical model of supercoiling dependent transcription predicts a structural aspect to gene regulation.Effects of DNA replication on mRNA noise.Whole Cell Modeling: From Single Cells to Colonies.Mechanical approach to chemical transportParallel STEPS: Large Scale Stochastic Spatial Reaction-Diffusion Simulation with High Performance Computers.Reaching new levels of realism in modeling biological macromolecules in cellular environments.Computational resources and strategies to construct single-molecule metabolic models of microbial cells.Multi-Algorithm Particle Simulations with Spatiocyte.Evaluation of Emerging Energy-Efficient Heterogeneous Computing Platforms for Biomolecular and Cellular Simulation WorkloadsChallenges of Integrating Stochastic Dynamics and Cryo-Electron Tomograms in Whole-Cell Simulations.Dynamics of simple gene-network motifs subject to extrinsic fluctuations.Features of genomic organization in a nucleotide-resolution molecular model of the Escherichia coli chromosome.Ribosome biogenesis in replicating cells: Integration of experiment and theoryReaDDyMM: Fast interacting particle reaction-diffusion simulations using graphical processing unitsMultiscale Modeling of Diffusion in a Crowded Environment.Accurate approximation to stochastic reaction diffusion on unstructured meshes in STEPS.Capturing Brownian dynamics with an on-lattice model of hard-sphere diffusion.Accurate reaction-diffusion operator splitting on tetrahedral meshes for parallel stochastic molecular simulations.Spatially extended hybrid methods: a review.RACIPE: a computational tool for modeling gene regulatory circuits using randomization.
P2860
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P2860
Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation.
description
2012 nî lūn-bûn
@nan
2012 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած
@hyw
2012 թվականի սեպտեմբերին հրատարակված գիտական հոդված
@hy
2012年の論文
@ja
2012年学术文章
@wuu
2012年学术文章
@zh-cn
2012年学术文章
@zh-hans
2012年学术文章
@zh-my
2012年学术文章
@zh-sg
2012年學術文章
@yue
name
Lattice Microbes: high-perform ...... ion-diffusion master equation.
@ast
Lattice Microbes: high-perform ...... ion-diffusion master equation.
@en
type
label
Lattice Microbes: high-perform ...... ion-diffusion master equation.
@ast
Lattice Microbes: high-perform ...... ion-diffusion master equation.
@en
prefLabel
Lattice Microbes: high-perform ...... ion-diffusion master equation.
@ast
Lattice Microbes: high-perform ...... ion-diffusion master equation.
@en
P2860
P356
P1476
Lattice Microbes: high-perform ...... ion-diffusion master equation.
@en
P2093
Elijah Roberts
John E Stone
P2860
P304
P356
10.1002/JCC.23130
P577
2012-09-25T00:00:00Z