VirusFinder: software for efficient and accurate detection of viruses and their integration sites in host genomes through next generation sequencing data.
about
VirusSeeker, a computational pipeline for virus discovery and virome composition analysisComprehensive profiling of retroviral integration sites using target enrichment methods from historical koala samples without an assembled reference genomeSummonChimera infers integrated viral genomes with nucleotide precision from NGS data.Finding Pathogenic Nucleic Acid Sequences in Next Generation Sequencing Data.Vy-PER: eliminating false positive detection of virus integration events in next generation sequencing data.Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers.A Next-Generation Sequencing Data Analysis Pipeline for Detecting Unknown Pathogens from Mixed Clinical Samples and Revealing Their Genetic Diversity.Single-stranded RNA viruses infecting the invasive Argentine ant, Linepithema humileA cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samplesDiscovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing.High-Throughput Sequencing, a VersatileWeapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical BacteriologyUnraveling the web of viroinformatics: computational tools and databases in virus research.Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot studyVERSE: a novel approach to detect virus integration in host genomes through reference genome customizationNCBI viral genomes resource.Alternative applications for distinct RNA sequencing strategies.VISA--Vector Integration Site Analysis server: a web-based server to rapidly identify retroviral integration sites from next-generation sequencing.NGS-based approach to determine the presence of HPV and their sites of integration in human cancer genome.Functional variants of human papillomavirus type 16 demonstrate host genome integration and transcriptional alterations corresponding to their unique cancer epidemiology.A fast and robust protocol for metataxonomic analysis using RNAseq data.GENE-IS: Time-Efficient and Accurate Analysis of Viral Integration Events in Large-Scale Gene Therapy Data.INSPIIRED: A Pipeline for Quantitative Analysis of Sites of New DNA Integration in Cellular GenomesBATVI: Fast, sensitive and accurate detection of virus integrations.No association between HPV positive breast cancer and expression of human papilloma viral transcripts.VIP: an integrated pipeline for metagenomics of virus identification and discoveryDivergent viral presentation among human tumors and adjacent normal tissues.ChimericSeq: An open-source, user-friendly interface for analyzing NGS data to identify and characterize viral-host chimeric sequencesThe Human Virome - Implications for Clinical Practice in Transplantation Medicine.A metagenomics study for the identification of respiratory viruses in mixed clinical specimens: an application of the iterative mapping approach.Long-term evolution of viruses: A Janus-faced balance.Virus-Clip: a fast and memory-efficient viral integration site detection tool at single-base resolution with annotation capability.Proceedings of the 12th Annual UT-ORNL-KBRIN Bioinformatics Summit 2013Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names.A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis.Transmission, Evolution, and Endogenization: Lessons Learned from Recent Retroviral Invasions.Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice.Characterization of viral RNA splicing using whole-transcriptome datasets from host species.NGS library preparation may generate artifactual integration sites of AAV vectors.VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.Using massively parallel shotgun sequencing of maternal plasmatic cell-free DNA for cytomegalovirus DNA detection during pregnancy: a proof of concept study.
P2860
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P2860
VirusFinder: software for efficient and accurate detection of viruses and their integration sites in host genomes through next generation sequencing data.
description
2013 nî lūn-bûn
@nan
2013 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2013 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
name
VirusFinder: software for effi ...... xt generation sequencing data.
@ast
VirusFinder: software for effi ...... xt generation sequencing data.
@en
type
label
VirusFinder: software for effi ...... xt generation sequencing data.
@ast
VirusFinder: software for effi ...... xt generation sequencing data.
@en
prefLabel
VirusFinder: software for effi ...... xt generation sequencing data.
@ast
VirusFinder: software for effi ...... xt generation sequencing data.
@en
P2860
P1433
P1476
VirusFinder: software for effi ...... xt generation sequencing data.
@en
P2093
Peilin Jia
Zhongming Zhao
P2860
P304
P356
10.1371/JOURNAL.PONE.0064465
P407
P50
P577
2013-05-24T00:00:00Z