Proteogenomic database construction driven from large scale RNA-seq data. - Wikidata - awgldk - TriplyDB

Proteogenomic database construction driven from large scale RNA-seq data.

Proteogenomic database construction driven from large scale RNA-seq data.

http://www.wikidata.org/entity/Q30651736

about

Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations Making proteomics data accessible and reusable: current state of proteomics databases and repositories Proteogenomics: concepts, applications and computational strategies A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data.Leveraging the complementary nature of RNA-Seq and shotgun proteomics data.Integration of mass spectrometry and RNA-Seq data to confirm human ab initio predicted genes and lncRNAs.Identification of rare alternative splicing events in MS/MS data reveals a significant fraction of alternative translation initiation sites.A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma Choosing an Optimal Database for Protein Identification from Tandem Mass Spectrometry Data.Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes.Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.Proteogenomics of Gammarus fossarum to document the reproductive system of amphipods.Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms.Proteomics informed by transcriptomics for characterising active transposable elements and genome annotation in Aedes aegypti.Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation JUMPg: An Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells.A systematic approach for peptide characterization of B-cell receptor in chronic lymphocytic leukemia cells.Forty-four novel protein-coding loci discovered using a proteomics informed by transcriptomics (PIT) approach in rat male germ cells.Integrated Transcriptomic-Proteomic Analysis Using a Proteogenomic Workflow Refines Rat Genome Annotation Translational Research and Plasma Proteomic in Cancer.Identification of differentially expressed splice variants by the proteogenomic pipeline Splicify.Methods, Tools and Current Perspectives in Proteogenomics.A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra.Integrating transcriptome and proteome profiling: Strategies and applications.A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites.Identification of Small Novel Coding Sequences, a Proteogenomics Endeavor.Proteogenomics for the Comprehensive Analysis of Human Cellular and Serum Antibody Repertoires.Polymorphism-aware protein databases - a prerequisite for an unbiased proteomic analysis of natural populations.ACTG: novel peptide mapping onto gene models.High-throughput parallel proteogenomics: a bacterial case study.Mining for Micropeptides.Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer.The antibody repertoire of colorectal cancer.Compact variant-rich customized sequence database and a fast and sensitive database search for efficient proteogenomic analyses.Computational identification of micro-structural variations and their proteogenomic consequences in cancer.

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P2860

Proteogenomic database construction driven from large scale RNA-seq data.

http://www.wikidata.org/entity/Q30651736

description

2013 nî lūn-bûn

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2013 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2013 թվականի հուլիսին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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name

Proteogenomic database construction driven from large scale RNA-seq data.

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Proteogenomic database construction driven from large scale RNA-seq data.

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type

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Proteogenomic database construction driven from large scale RNA-seq data.

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Proteogenomic database construction driven from large scale RNA-seq data.

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Proteogenomic database construction driven from large scale RNA-seq data.

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Proteogenomic database construction driven from large scale RNA-seq data.

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Journal of Proteome Research

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Proteogenomic database construction driven from large scale RNA-seq data.

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P2093

Clark Guest

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Gennifer Merrihew

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Natalie Castellana

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Seong Won Cha

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Sunghee Woo

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Yupeng He

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P2860

The genetics of Caenorhabditis elegans

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1

The human genome browser at UCSC

Basic local alignment search tool

The Sequence Alignment/Map format and SAMtools

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

The ENCODE (ENCyclopedia Of DNA Elements) Project

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1

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13

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Michael J MacCoss

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2013-07-17T00:00:00Z

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