Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification. - Wikidata - awgldk - TriplyDB

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification.

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification.

http://www.wikidata.org/entity/Q30710808

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Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research Single molecule and single cell epigenomics.Genome-wide epigenomic profiling for biomarker discovery Protein-DNA binding in high-resolution Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis Epigenomic landscapes of retinal rods and cones Conservation of transcription factor binding specificities across 600 million years of bilateria evolution BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes.Age-associated chromatin relaxation is enhanced in Huntington's disease mice.Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads The haploinsufficient tumor suppressor, CUX1, acts as an analog transcriptional regulator that controls target genes through distal enhancers that loop to target promoters.Chromatin accessibility: a window into the genome.Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection.DNase footprint signatures are dictated by factor dynamics and DNA sequence Map of open and closed chromatin domains in Drosophila genome.Mechanisms of x chromosome dosage compensation.Evolving insights on how cytosine methylation affects protein-DNA binding.Survey of protein-DNA interactions in Aspergillus oryzae on a genomic scale Wellington-bootstrap: differential DNase-seq footprinting identifies cell-type determining transcription factors.Genome-wide footprinting: ready for prime time?Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear Enzymes.Steroid Receptors Reprogram FoxA1 Occupancy through Dynamic Chromatin Transitions.Novel method to ascertain chromatin accessibility at specific genomic loci from frozen brain homogenates and laser capture microdissected defined cells A synergistic DNA logic predicts genome-wide chromatin accessibility.Mapping 3D genome architecture through in situ DNase Hi-C DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.Imputation for transcription factor binding predictions based on deep learning Transcriptional regulatory logic of the diurnal cycle in the mouse liver.Genome-Wide Epigenetic Studies in Human Disease: A Primer on -Omic Technologies An autoregulatory enhancer controls mammary-specific STAT5 functions.miR-93 regulates Msk2-mediated chromatin remodelling in diabetic nephropathy Functional characterization of open chromatin in bidirectional promoters of rice.Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles.Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape.The role of chromatin dynamics in immune cell development.Identifying and mitigating bias in next-generation sequencing methods for chromatin biology.High-resolution digital profiling of the epigenome.Decoding neural transcriptomes and epigenomes via high-throughput sequencing.

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P2860

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification.

http://www.wikidata.org/entity/Q30710808

description

2013 nî lūn-bûn

@nan

2013 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2013 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

@zh-hant

2013年論文

@zh-hk

2013年論文

@zh-mo

2013年論文

@zh-tw

2013年论文

@wuu

name

Refined DNase-seq protocol and ...... ctor footprint identification.

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Refined DNase-seq protocol and ...... ctor footprint identification.

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type

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Refined DNase-seq protocol and ...... ctor footprint identification.

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Refined DNase-seq protocol and ...... ctor footprint identification.

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Refined DNase-seq protocol and ...... ctor footprint identification.

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Refined DNase-seq protocol and ...... ctor footprint identification.

@en

P2093

Chongzhi Zang

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Clifford A Meyer

http://www.w3.org/2001/XMLSchema#string

Han Xu

http://www.w3.org/2001/XMLSchema#string

Henry Long

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Mei-Wei Chen

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Prakash K Rao

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Sheng'en Shawn Hu

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Teng Fei

http://www.w3.org/2001/XMLSchema#string

X Shirley Liu

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Yin Liu

http://www.w3.org/2001/XMLSchema#string

P2860

Model-based analysis of ChIP-Seq (MACS)

An integrated encyclopedia of DNA elements in the human genome

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

The accessible chromatin landscape of the human genome

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

DNAse footprinting: a simple method for the detection of protein-DNA binding specificity

New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism

An expansive human regulatory lexicon encoded in transcription factor footprints

Systematic localization of common disease-associated variation in regulatory DNA

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73-78

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10.1038/NMETH.2762

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1

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11

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Housheng Hansen He

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2013-12-08T00:00:00Z

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259247673

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1033430428

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24317252

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