Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots
about
Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial)Genome-Wide Survey of Gut Fungi (Harpellales) Reveals the First Horizontally Transferred Ubiquitin Gene from a Mosquito HostIdentifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assembliesPalaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematodeNo evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardiniGenomic and transcriptomic resources for assassin flies including the complete genome sequence of Proctacanthus coquilletti (Insecta: Diptera: Asilidae) and 16 representative transcriptomesCandidate pathogenicity islands in the genome of 'Candidatus Rickettsiella isopodorum', an intracellular bacterium infecting terrestrial isopod crustaceansChemosensory adaptations of the mountain fly Drosophila nigrosparsa (Insecta: Diptera) through genomics' and structural biology's lenses.Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protistPrevention, diagnosis and treatment of high-throughput sequencing data pathologies.Quality control of next-generation sequencing data without a referenceQuality assessment and control of high-throughput sequencing data.Microbial Community Responses to Increased Water and Organic Matter in the Arid Soils of the McMurdo Dry Valleys, Antarctica.Quality control on the frontier.Draft genome of the honey bee ectoparasitic mite, Tropilaelaps mercedesae, is shaped by the parasitic life history.A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana.Expansion and diversification of the MSDIN family of cyclic peptide genes in the poisonous agarics Amanita phalloides and A. bisporigera.Improving the quality of genome, protein sequence, and taxonomy databases: a prerequisite for microbiome meta-omics 2.0.NCBI BLAST+ integrated into Galaxy.Metagenomic insights into communities, functions of endophytes, and their associates with infection by root-knot nematode, Meloidogyne incognita, in tomato rootsAn Efficient Strategy Developed for Next-Generation Sequencing of Endosymbiont Genomes Performed Using Crude DNA Isolated from Host Tissues: A Case Study of Blattabacterium cuenoti Inhabiting the Fat Bodies of CockroachesThe draft genome of MD-2 pineapple using hybrid error correction of long reads.Genome Skimming: A Rapid Approach to Gaining Diverse Biological Insights into Multicellular Pathogens.Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis.Strategies for complete plastid genome sequencing.Improved annotation with de novo transcriptome assembly in four social amoeba species.Decay of Sexual Trait Genes in an Asexual Parasitoid Wasp.Genome Sequences of Three Pseudoalteromonas Strains (P1-8, P1-11, and P1-30), Isolated from the Marine Hydroid Hydractinia echinata.Draft Genome Sequences of Six Pseudoalteromonas Strains, P1-7a, P1-9, P1-13-1a, P1-16-1b, P1-25, and P1-26, Which Induce Larval Settlement and Metamorphosis in Hydractinia echinataDraft Genome Sequence of Shewanella sp. Strain P1-14-1, a Bacterial Inducer of Settlement and Morphogenesis in Larvae of the Marine Hydroid Hydractinia echinataReply to Bemm et al. and Arakawa: Identifying foreign genes in independent Hypsibius dujardini genome assemblies.The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence.Gene Family Evolution Reflects Adaptation to Soil Environmental Stressors in the Genome of the Collembolan Orchesella cincta.Draft Genome Sequence of Streptomyces sp. Strain PTY087I2, Isolated from Styela canopus, a Panamanian Tunicate.Draft Genome Sequence of the Bactrocera oleae Symbiont "Candidatus Erwinia dacicola"Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis).Torix group Rickettsia are widespread in Culicoides biting midges (Diptera: Ceratopogonidae), reach high frequency and carry unique genomic features.Short reads from honey bee (Apis sp.) sequencing projects reflect microbial associate diversityPhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies.Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing.
P2860
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P2860
Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots
description
2013 nî lūn-bûn
@nan
2013 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած
@hyw
2013 թվականի նոյեմբերին հրատարակված գիտական հոդված
@hy
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
name
Blobology: exploring raw genom ...... on-annotated GC-coverage plots
@ast
Blobology: exploring raw genom ...... on-annotated GC-coverage plots
@en
type
label
Blobology: exploring raw genom ...... on-annotated GC-coverage plots
@ast
Blobology: exploring raw genom ...... on-annotated GC-coverage plots
@en
prefLabel
Blobology: exploring raw genom ...... on-annotated GC-coverage plots
@ast
Blobology: exploring raw genom ...... on-annotated GC-coverage plots
@en
P2093
P2860
P356
P1476
Blobology: exploring raw genom ...... on-annotated GC-coverage plots
@en
P2093
Mark Blaxter
Martin Jones
Michael Clarke
P2860
P356
10.3389/FGENE.2013.00237
P577
2013-11-29T00:00:00Z