Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome - Wikidata - awgldk - TriplyDB

Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

http://www.wikidata.org/entity/Q30912427

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Taming of the shrewd: novel eukaryotic genes from RNA viruses The Amborella Genome and the Evolution of Flowering Plants The genome of woodland strawberry (Fragaria vesca)Analysis of the bread wheat genome using whole-genome shotgun sequencing A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure Genetic and genomic toolbox of Zea mays Draft genome of the living fossil Ginkgo biloba Identification and characterization of abundant repetitive sequences in Eragrostis tef cv. Enatite genome Evolution of centromeric retrotransposons in grasses Virus-like attachment sites and plastic CpG islands:landmarks of diversity in plant Del retrotransposons Structural characterization of copia-type retrotransposons leads to insights into the marker development in a biofuel crop, Jatropha curcas L RNA-Mediated Gene Duplication and Retroposons: Retrogenes, LINEs, SINEs, and Sequence Specificity Genome-wide analysis of syntenic gene deletion in the grasses Dynamics and adaptive benefits of protein domain emergence and arrangements during plant genome evolution Physiological framework for adaptation of stomata to CO2 from glacial to future concentrations Characterization of the genome of bald cypress The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.A genome-wide analysis of simple sequence repeats in maize and the development of polymorphism markers from next-generation sequence data.Methods for accurate quantification of LTR-retrotransposon copy number using short-read sequence data: a case study in Sorghum.Considerations and complications of mapping small RNA high-throughput data to transposable elements Retrotransposon BARE displays strong tissue-specific differences in expression.Genome-Wide Characterization of Maize Small RNA Loci and Their Regulation in the required to maintain repression6-1 (rmr6-1) Mutant and Long-Term Abiotic Stresses.Detailed analysis of a contiguous 22-Mb region of the maize genome.Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants?Complexity of genetic mechanisms conferring nonuniformity of recombination in maize Stress-induced activation of heterochromatic transcription.Integrative analysis of DNA methylation, mRNAs, and small RNAs during maize embryo dedifferentiation.BrassicaTED - a public database for utilization of miniature transposable elements in Brassica species Evolutionary dynamics of retrotransposons assessed by high-throughput sequencing in wild relatives of wheat.Structural characterization of helitrons and their stepwise capturing of gene fragments in the maize genome.The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story.MASiVEdb: the Sirevirus Plant Retrotransposon Database.Reference genome sequence of the model plant Setaria.Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome.G protein activation without a GEF in the plant kingdom.Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades.The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.The selection and use of sorghum (Sorghum propinquum) bacterial artificial chromosomes as cytogenetic FISH probes for maize (Zea mays L.).Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes.

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Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

http://www.wikidata.org/entity/Q30912427

description

2009 nî lūn-bûn

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2009 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2009年の論文

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2009年学术文章

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2009年学术文章

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2009年学术文章

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2009年学术文章

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2009年学术文章

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2009年學術文章

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Exceptional diversity, non-ran ...... ements in the B73 maize genome

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Exceptional diversity, non-ran ...... ements in the B73 maize genome

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Exceptional diversity, non-ran ...... ements in the B73 maize genome

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Exceptional diversity, non-ran ...... ements in the B73 maize genome

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Exceptional diversity, non-ran ...... ements in the B73 maize genome

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Exceptional diversity, non-ran ...... ements in the B73 maize genome

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JOURNAL.PGEN.1000732

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Exceptional diversity, non-ran ...... ements in the B73 maize genome

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Ansuya Jogi

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Cristian Chaparro

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Jean-Marc Deragon

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Jeffrey L Bennetzen

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Naadira Upshaw

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Phillip J Sanmiguel

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Richard P Westerman

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P2860

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

The B73 Maize Genome: Complexity, Diversity, and Dynamics

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

MUSCLE: multiple sequence alignment with high accuracy and high throughput

Rolling-circle transposons in eukaryotes

The many hues of plant heterochromatin

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

PAML 4: phylogenetic analysis by maximum likelihood

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10.1371/JOURNAL.PGEN.1000732

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11

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