Transmembrane proteins in the Protein Data Bank: identification and classification.
about
The role of hydrophobic interactions in positioning of peripheral proteins in membranesPositioning of proteins in membranes: a computational approachStoichiometry of lipid interactions with transmembrane proteins--Deduced from the 3D structuresMembrane protein prediction methodsEvaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction methodPDB_TM: selection and membrane localization of transmembrane proteins in the protein data bankTMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteinsTMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins.Single-particle cryo-EM of calcium release channels: structural validationStructural analysis of a peptide fragment of transmembrane transporter protein bilitranslocaseA Novel Family of Soluble Minimal Scaffolds Provides Structural Insight into the Catalytic Domains of Integral Membrane MetallopeptidasesDelivery of nucleic acids and nanomaterials by cell-penetrating peptides: opportunities and challengesComputational comparative study of tuberculosis proteomes using a model learned from signal peptide structuresMeMotif: a database of linear motifs in alpha-helical transmembrane proteinsTOPDB: topology data bank of transmembrane proteinsOPM: orientations of proteins in membranes databaseComputing structure-based lipid accessibility of membrane proteins with mp_lipid_acc in RosettaMP.Structure alignment of membrane proteins: Accuracy of available tools and a consensus strategyPDBTM: Protein Data Bank of transmembrane proteins after 8 yearsMembrane thickness varies around the circumference of the transmembrane protein BtuB.Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information.How many 3D structures do we need to train a predictor?Analysis of structured and intrinsically disordered regions of transmembrane proteinsA unified hydrophobicity scale for multispan membrane proteins.Orientation of the Escherichia coli outer membrane protein OmpX in phospholipid bilayer membranes determined by solid-State NMR.A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins.Databases, Repositories, and Other Data Resources in Structural Biology.TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.Multipass membrane protein structure prediction using RosettaTransmembrane protein alignment and fold recognition based on predicted topologyClassification of α-helical membrane proteins using predicted helix architecturesAnalysis of dihedral angle preferences for alanine and glycine residues in alpha and beta transmembrane regions.Helix kinks are equally prevalent in soluble and membrane proteins.De novo high-resolution protein structure determination from sparse spin-labeling EPR data.Low complexity and disordered regions of proteins have different structural and amino acid preferences.BCL::MP-fold: Membrane protein structure prediction guided by EPR restraintsThe observation of evolutionary interaction pattern pairs in membrane proteins.Sequence-structure relationship study in all-α transmembrane proteins using an unsupervised learning approach.Hybrid approaches: applying computational methods in cryo-electron microscopyPredicting protein-protein binding sites in membrane proteins.
P2860
Q21093294-7CF6D77F-7B38-4137-8835-60D2310A2FA0Q24647761-C1A73227-3D78-4000-95FE-C76965DE2F7CQ24647836-F01416EA-7616-45B1-8309-511751FE0F02Q24683612-1D929C03-5F25-457B-B4C4-D0B097DC31E6Q24792706-8E0A183F-1FC8-4FA2-AFCB-C47594174916Q24792785-FC495373-A0A5-4B02-94F4-85EF0F381CE2Q24811454-06D6CC10-91BA-4C2B-B5B8-A71A939E92B5Q24812304-037A9D28-6338-4770-A93C-960253549DB2Q26862200-C3BD5042-ABD2-4BEF-B5F9-BF5D8AEC5A35Q27301091-5F421153-105A-4DE3-8536-1CE900C95FD3Q27678477-1C694A21-FF98-4E0D-A010-3B47AB0F87ECQ28087352-1C85EE39-5E1A-40BF-A7CA-892FD9965F4AQ28482196-7A82BAC3-7E3C-4857-A5D3-0878CE640FF3Q28749242-33889B02-BD8F-45FA-BAA7-B7B3F79CD22CQ28755654-B7F4DDD7-4557-4252-AC89-D0FD55250A79Q29616317-D09A75C1-EC3A-443C-B982-40903D872836Q30152661-A7E581CA-B73C-4E89-AC18-D6E2D441F3CBQ30152895-0BFDED34-8AB6-414C-AFFE-0DE4A0F04FE3Q30155169-5B4A62DA-11A2-451E-98D5-D8DEB4C364FAQ30155833-450986DC-2FCC-457D-9642-392C7BA755FCQ30155964-4DE01D6A-7358-4A37-8BEB-AD00E3C305CCQ30157041-73070DB0-9B18-45A2-B906-2E24932DD96FQ30157208-46914CFE-9840-475D-962A-692BDC0D9ECDQ30157444-F349238D-5F49-4D95-9AFE-886C7C848659Q30157669-53841E93-B5C2-4C07-AD16-A8D823349B8FQ30160020-8FC38EBA-E004-4BB7-A0E2-072DEEDF8F81Q30252226-847BFCD7-FA61-4D16-9AA0-CB97415B6E1AQ30344223-1EBF9ED5-3389-4FDE-B62C-045E24C7693BQ30352314-A1479117-E7FF-4B37-85F6-E46B1AE11487Q30352431-85D799AC-EB9E-4111-ADBD-92B23B451B72Q30355362-F4556383-B42E-4D0C-A2D0-F2F49EF716DAQ30360173-17654119-6868-483D-9381-5BABDAAD8D93Q30360293-439AA934-8975-4FAA-A6CF-FF662CB0E2C9Q30367770-CD580D58-9E59-4B1D-8615-F179D9BE0DDDQ30369339-9682DE39-3C8E-469C-AAD3-256E3E38467FQ30373207-C9DBA408-C541-4F2C-93C2-DA4D8E458996Q30373873-E132D161-5EC3-4E6E-B44F-14A3377AA021Q30375311-E11221CF-E2C5-4A5B-8FF9-F7B4F6C31B54Q30375918-E5C64F5A-8124-4E05-9F1D-DA3794CC15E0Q30381038-7FB6EEBA-0336-4A9C-AB06-6EBCAEE06CC4
P2860
Transmembrane proteins in the Protein Data Bank: identification and classification.
description
2004 nî lūn-bûn
@nan
2004 թուականի Յունիսին հրատարակուած գիտական յօդուած
@hyw
2004 թվականի հունիսին հրատարակված գիտական հոդված
@hy
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
name
Transmembrane proteins in the Protein Data Bank: identification and classification.
@ast
Transmembrane proteins in the Protein Data Bank: identification and classification.
@en
type
label
Transmembrane proteins in the Protein Data Bank: identification and classification.
@ast
Transmembrane proteins in the Protein Data Bank: identification and classification.
@en
prefLabel
Transmembrane proteins in the Protein Data Bank: identification and classification.
@ast
Transmembrane proteins in the Protein Data Bank: identification and classification.
@en
P356
P1433
P1476
Transmembrane proteins in the Protein Data Bank: identification and classification
@en
P2093
Zsuzsanna Dosztányi
P304
P356
10.1093/BIOINFORMATICS/BTH340
P407
P577
2004-06-04T00:00:00Z