Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA.
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Evidence that ebolaviruses and cuevaviruses have been diverging from marburgviruses since the MioceneLong-branch attraction bias and inconsistency in Bayesian phylogeneticsHeterotachy and long-branch attraction in phylogeneticsDiscovery of the photosynthetic relatives of the "Maltese mushroom" CynomoriumPhylogenetic inference in Rafflesiales: the influence of rate heterogeneity and horizontal gene transferMolecular phylogeny of pearl oysters and their relatives (Mollusca, Bivalvia, Pterioidea)Phylogenetic relationships among deep-sea and chemosynthetic sea anemones: actinoscyphiidae and actinostolidae (Actiniaria: Mesomyaria)Using plastid genome-scale data to resolve enigmatic relationships among basal angiospermsMitochondrial genome of Trichoplax adhaerens supports placozoa as the basal lower metazoan phylumThe deep archaeal roots of eukaryotesThe evolutionary biology of poxvirusesLophotrochozoa internal phylogeny: new insights from an up-to-date analysis of nuclear ribosomal genesPhylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eyeLong branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct modelProblematica old and newMolecular phylogeny of the Drosophila obscura species group, with emphasis on the Old World speciesCharting uncertainty about ant originsPhylogenetic analysis of the genus Laparocerus, with comments on colonisation and diversification in Macaronesia (Coleoptera, Curculionidae, Entiminae).Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justifiedEM for phylogenetic topology reconstruction on nonhomogeneous dataPhylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy.Species complexes and phylogenetic lineages of Hoferellus (Myxozoa, Cnidaria) including revision of the genus: A problematic case for taxonomy.Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers.Molecular dating in the evolution of vertebrate poxviruses.Strepsiptera, phylogenomics and the long branch attraction problem.Untangling long branches: identifying conflicting phylogenetic signals using spectral analysis, neighbor-net, and consensus networks.Utility of characters evolving at diverse rates of evolution to resolve quartet trees with unequal branch lengths: analytical predictions of long-branch effects.Motility, morphology and phylogeny of the plasmodial worm, Ceratomyxa vermiformis n. sp. (Cnidaria: Myxozoa: Myxosporea).The effect of branch lengths on phylogeny: an empirical study using highly conserved orthologs from mammalian genomes.Evaluating the Evolutionary Origins of Unexpected Character Distributions within the Bacterial Planctomycetes-Verrucomicrobia-Chlamydiae SuperphylumCan quartet analyses combining maximum likelihood estimation and Hennigian logic overcome long branch attraction in phylogenomic sequence data?The methanogenic redox cofactor F420 is widely synthesized by aerobic soil bacteria.ImOSM: intermittent evolution and robustness of phylogenetic methods.Phylogenetic relationships of Hemiptera inferred from mitochondrial and nuclear genes.Statistical comparison of nucleotide, amino acid, and codon substitution models for evolutionary analysis of protein-coding sequences.Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms.Synonymous substitutions substantially improve evolutionary inference from highly diverged proteins.Coalescent methods are robust to the simultaneous effects of long branches and incomplete lineage sorting.Embracing Uncertainty in Reconstructing Early Animal Evolution.Maximum likelihood inference of small trees in the presence of long branches.
P2860
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P2860
Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA.
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2004 nî lūn-bûn
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2004 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած
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2004 թվականի նոյեմբերին հրատարակված գիտական հոդված
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2004年の論文
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2004年学术文章
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Should we be worried about lon ...... tions using metazoan 18S rDNA.
@ast
Should we be worried about lon ...... tions using metazoan 18S rDNA.
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Should we be worried about lon ...... tions using metazoan 18S rDNA.
@ast
Should we be worried about lon ...... tions using metazoan 18S rDNA.
@en
prefLabel
Should we be worried about lon ...... tions using metazoan 18S rDNA.
@ast
Should we be worried about lon ...... tions using metazoan 18S rDNA.
@en
P1476
Should we be worried about lon ...... tions using metazoan 18S rDNA.
@en
P2093
David L Swofford
Frank E Anderson
P304
P356
10.1016/J.YMPEV.2004.06.015
P577
2004-11-01T00:00:00Z