Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.
about
Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralizationStructure of the chloroplast ribosome: novel domains for translation regulationStructural basis for cargo regulation of COPII coat assembly.Structure of the E. coli protein-conducting channel bound to a translating ribosomeEMDataBank.org: unified data resource for CryoEMRefinement of docked protein-ligand and protein-DNA structures using low frequency normal mode amplitude optimization.Integrative Modeling of Macromolecular Assemblies from Low to Near-Atomic ResolutionATTRACT-EM: a new method for the computational assembly of large molecular machines using cryo-EM mapsThree-dimensional EM structure of an intact activator-dependent transcription initiation complextmRNA-SmpB: a journey to the centre of the bacterial ribosome.Phosphorylated Smooth Muscle Heavy Meromyosin Shows an Open Conformation Linked to ActivationSuper-resolution biomolecular crystallography with low-resolution dataFlexible fitting of atomic structures into electron microscopy maps using molecular dynamics.Hybrid approaches: applying computational methods in cryo-electron microscopyEM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps.Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment.CHARMM-GUI MDFF/xMDFF Utilizer for Molecular Dynamics Flexible Fitting Simulations in Various Environments.Accurate flexible fitting of high-resolution protein structures into cryo-electron microscopy maps using coarse-grained pseudo-energy minimizationModeling protein structure at near atomic resolutions with Gorgon.Accurate flexible fitting of high-resolution protein structures to small-angle x-ray scattering data using a coarse-grained model with implicit hydration shell.Computational methods for constructing protein structure models from 3D electron microscopy maps.Damped-dynamics flexible fitting.Coarse-grained free energy functions for studying protein conformational changes: a double-well network model.Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations.Iterative cluster-NMA: A tool for generating conformational transitions in proteins.Examinations of tRNA Range of Motion Using Simulations of Cryo-EM Microscopy and X-Ray Data.Multiscale natural moves refine macromolecules using single-particle electron microscopy projection imagesUCSF Chimera, MODELLER, and IMP: an integrated modeling system.Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods.Visualization of retroviral envelope spikes in complex with the V3 loop antibody 447-52D on intact viruses by cryo-electron tomography.Cryo-EM Data Are Superior to Contact and Interface Information in Integrative Modeling.Normal-mode flexible fitting of high-resolution structure of biological molecules toward one-dimensional low-resolution dataAb initio modeling of the herpesvirus VP26 core domain assessed by CryoEM density.Methods for identifying and averaging variable molecular conformations in tomograms of actively contracting insect flight muscle.Unified data resource for cryo-EM.Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.MOTIF-EM: an automated computational tool for identifying conserved regions in CryoEM structures.Computational Methodologies for Real-Space Structural Refinement of Large Macromolecular Complexes.Consensus among flexible fitting approaches improves the interpretation of cryo-EM data.Single-particle reconstruction of biological macromolecules in electron microscopy--30 years.
P2860
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P2860
Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.
description
2004 nî lūn-bûn
@nan
2004 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած
@hyw
2004 թվականի սեպտեմբերին հրատարակված գիտական հոդված
@hy
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
name
Normal mode based flexible fit ...... xperimental data from cryo-EM.
@ast
Normal mode based flexible fit ...... xperimental data from cryo-EM.
@en
type
label
Normal mode based flexible fit ...... xperimental data from cryo-EM.
@ast
Normal mode based flexible fit ...... xperimental data from cryo-EM.
@en
prefLabel
Normal mode based flexible fit ...... xperimental data from cryo-EM.
@ast
Normal mode based flexible fit ...... xperimental data from cryo-EM.
@en
P1476
Normal mode based flexible fit ...... xperimental data from cryo-EM.
@en
P2093
Charles L Brooks
Osamu Miyashita
P304
P356
10.1016/J.JSB.2004.03.002
P577
2004-09-01T00:00:00Z