HiC-Pro: an optimized and flexible pipeline for Hi-C data processing. - Wikidata - awgldk - TriplyDB

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.

http://www.wikidata.org/entity/Q31029404

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The second decade of 3C technologies: detailed insights into nuclear organization Analysis methods for studying the 3D architecture of the genome Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity Extending partial haplotypes to full genome haplotypes using chromosome conformation capture data.ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking.Software tools for visualizing Hi-C data.The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension Dynamic chromatin accessibility modeled by Markov process of randomly-moving molecules in the 3D genome HiChIP: efficient and sensitive analysis of protein-directed genome architecture.Genome-wide mapping and analysis of chromosome architecture.SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes.Massively multiplex single-cell Hi-C.How best to identify chromosomal interactions: a comparison of approaches.Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data.HiCRep: assessing the reproducibility of Hi-C data using a stratum- adjusted correlation coefficient.Allelic reprogramming of 3D chromatin architecture during early mammalian development.MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions.Capturing genomic relationships that matter Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments.LOGIQA: a database dedicated to long-range genome interactions quality assessment.Discovery of stimulation-responsive immune enhancers with CRISPR activation.PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family.Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation.Identifying topologically associating domains and subdomains by Gaussian Mixture model And Proportion test Advances in Genomic Profiling and Analysis of 3D Chromatin Structure and Interaction.Genome contact map explorer: a platform for the comparison, interactive visualization and analysis of genome contact maps.Three-dimensional genome architecture and emerging technologies: looping in disease.Intranuclear and higher-order chromatin organization of the major histone gene cluster in breast cancer.Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements.Identification of copy number variations and translocations in cancer cells from Hi-C data.4D Nucleome Analysis Toolbox: Analysis of Hi-C data with abnormal karyotype and time series capabilities.The methyltransferase SETDB1 regulates a large neuron-specific topological chromatin domain.Utilizing networks for differential analysis of chromatin interactions.A Prostate Cancer Risk Element Functions as a Repressive Loop that Regulates HOXA13.Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation.GRID-seq reveals the global RNA-chromatin interactome.Enhancing the Promise of Drug Repositioning through Genetics.EpiDenovo: a platform for linking regulatory de novo mutations to developmental epigenetics and diseases.CRNET: An efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data.

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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.

http://www.wikidata.org/entity/Q31029404

description

2015 nî lūn-bûn

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2015 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2015 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2015年の論文

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2015年論文

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2015年論文

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2015年論文

@zh-hk

2015年論文

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2015年論文

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2015年论文

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name

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.

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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.

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type

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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.

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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.

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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.

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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.

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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.

@en

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Bryan R Lajoie

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Chong-Jian Chen

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Edith Heard

http://www.w3.org/2001/XMLSchema#string

Eric Viara

http://www.w3.org/2001/XMLSchema#string

Job Dekker

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

Fast gapped-read alignment with Bowtie 2

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

C-ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher-Order Chromatin Organization

Topological domains in mammalian genomes identified by analysis of chromatin interactions

BEDTools: a flexible suite of utilities for comparing genomic features.

Spatial partitioning of the regulatory landscape of the X-inactivation centre

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

Iterative correction of Hi-C data reveals hallmarks of chromosome organization.

HiCNorm: removing biases in Hi-C data via Poisson regression

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259

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16

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Jean-Philippe Vert

Nicolas Servant

Nelle Varoquaux

Emmanuel Barillot

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2015-12-01T00:00:00Z

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284563169

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26619908

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4665391

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