Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genome. - Wikidata - awgldk - TriplyDB

Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genome.

Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genome.

http://www.wikidata.org/entity/Q31076872

about

CTCF: an architectural protein bridging genome topology and function The role of chromatin insulators in nuclear architecture and genome function Targeting CTCF to Control Virus Gene Expression: A Common Theme amongst Diverse DNA Viruses Grabbing the genome by the NADs CTCF regulates the human p53 gene through direct interaction with its natural antisense transcript, Wrap53.Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes Architectural proteins CTCF and cohesin have distinct roles in modulating the higher order structure and expression of the CFTR locus.Architectural proteins: regulators of 3D genome organization in cell fate The Chromatin Remodelling Enzymes SNF2H and SNF2L Position Nucleosomes adjacent to CTCF and Other Transcription Factors.A Sox2 distal enhancer cluster regulates embryonic stem cell differentiation potential.Integrative modeling of eQTLs and cis-regulatory elements suggests mechanisms underlying cell type specificity of eQTLs.Characterization of constitutive CTCF/cohesin loci: a possible role in establishing topological domains in mammalian genomes.Locus-specific targeting to the X chromosome revealed by the RNA interactome of CTCF.An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape CCCTC-binding factor recruitment to the early region of the human papillomavirus 18 genome regulates viral oncogene expression.CTCF as a multifunctional protein in genome regulation and gene expression.Tissue-specific epigenetics in gene neighborhoods: myogenic transcription factor genes.Functional Requirements for Fab-7 Boundary Activity in the Bithorax Complex.Genome-wide identification and characterisation of HOT regions in the human genome.The Glucocorticoid Receptor Regulates the ANGPTL4 Gene in a CTCF-Mediated Chromatin Context in Human Hepatic Cells Chromatin insulators: linking genome organization to cellular function Different Evolutionary Strategies To Conserve Chromatin Boundary Function in the Bithorax Complex.Defining the multivalent functions of CTCF from chromatin state and three-dimensional chromatin interactions.The 3D genome in transcriptional regulation and pluripotency A variably occupied CTCF binding site in the ultrabithorax gene in the Drosophila bithorax complex.Crossed wires: 3D genome misfolding in human disease.B cell differentiation is associated with reprogramming the CCCTC binding factor-dependent chromatin architecture of the murine MHC class II locus.Evidence for the in vivo safety of insulated foamy viral vectors Insulated Foamy Viral Vectors.When TADs go bad: chromatin structure and nuclear organisation in human disease CRISPR/Cas9 genome editing throws descriptive 3-D genome folding studies for a loop.CTCF induces histone variant incorporation, erases the H3K27me3 histone mark and opens chromatin.A dynamic CTCF chromatin binding landscape promotes DNA hydroxymethylation and transcriptional induction of adipocyte differentiation Boundaries of loop domains (insulators): Determinants of chromosome form and function in multicellular eukaryotes.DNA cytosine hydroxymethylation levels are distinct among non-overlapping classes of peripheral blood leukocytes.Multiscale 3D Genome Rewiring during Mouse Neural Development.Tracing the evolution of lineage-specific transcription factor binding sites in a birth-death framework The CCCTC-binding factor (CTCF)-forkhead box protein M1 axis regulates tumour growth and metastasis in hepatocellular carcinoma.Distinct Trends of DNA Methylation Patterning in the Innate and Adaptive Immune Systems.CTCF-Induced Circular DNA Complexes Observed by Atomic Force Microscopy.

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P2860

Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genome.

http://www.wikidata.org/entity/Q31076872

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2012 nî lūn-bûn

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2012 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2012 թվականի հուլիսին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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Shengqi Wang

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Yao Tian

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P2860

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

A user's guide to the encyclopedia of DNA elements (ENCODE)

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Mapping and quantifying mammalian transcriptomes by RNA-Seq

The zinc finger protein CTCF binds to the APBbeta domain of the amyloid beta-protein precursor promoter. Evidence for a role in transcriptional activation

An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions

ENCODE whole-genome data in the UCSC genome browser (2011 update)

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