Normalization and microbial differential abundance strategies depend upon data characteristics. - Wikidata - awgldk - TriplyDB

Normalization and microbial differential abundance strategies depend upon data characteristics.

Normalization and microbial differential abundance strategies depend upon data characteristics.

http://www.wikidata.org/entity/Q31169829

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Vaginal and Uterine Bacterial Communities in Postpartum Lactating Cows.MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data Genetic influences on the human oral microbiome Root Hair Mutations Displace the Barley Rhizosphere Microbiota Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children.Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome.A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity.Morphological and genetic factors shape the microbiome of a seabird species (Oceanodroma leucorhoa) more than environmental and social factors.Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes.Evidence from the gut microbiota of swarming alates of a vertical transmission of the bacterial symbionts in Nasutitermes arborum (Termitidae, Nasutitermitinae).How to normalize metatranscriptomic count data for differential expression analysis.Enhancing the Resolution of Rumen Microbial Classification from Metatranscriptomic Data Using Kraken and Mothur.Microbiome Datasets Are Compositional: And This Is Not Optional.Composition of Micro-eukaryotes on the Skin of the Cascades Frog (Rana cascadae) and Patterns of Correlation between Skin Microbes and Batrachochytrium dendrobatidis.Experimental design and quantitative analysis of microbial community multiomics.Comparative Metagenomics Reveals the Distinctive Adaptive Features of the Spongia officinalis Endosymbiotic Consortium The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease.Stress and stability: applying the Anna Karenina principle to animal microbiomes.Gut microbiota composition is associated with environmental landscape in honey bees.Rates of gut microbiome divergence in mammals.'TIME': A Web Application for Obtaining Insights into Microbial Ecology Using Longitudinal Microbiome Data.Is there a link between aging and microbiome diversity in exceptional mammalian longevity?Vaccination Against Lawsonia intracellularis Decreases Shedding of Salmonella enterica serovar Typhimurium in Co-Infected Pigs and Alters the Gut Microbiome.The gills of reef fish support a distinct microbiome influenced by host-specific factors.MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies.Interactions among plants, bacteria, and fungi reduce extracellular enzyme activities under long-term N fertilization.Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity.Reproducible protocols for metagenomic analysis of human faecal phageomes.The Response of a 16S Ribosomal RNA Gene Fragment Amplified Community to Lead, Zinc, and Copper Pollution in a Shanghai Field Trial.A Lachnospiraceae-dominated bacterial signature in the fecal microbiota of HIV-infected individuals from Colombia, South America.GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data.The impact of storage buffer, DNA extraction method, and polymerase on microbial analysis.Maternal omega-3 fatty acids regulate offspring obesity through persistent modulation of gut microbiota.Linking cervicovaginal immune signatures, HPV and microbiota composition in cervical carcinogenesis in non-Hispanic and Hispanic women.Comparison of Channel Catfish and Blue Catfish Gut Microbiota Assemblages Shows Minimal Effects of Host Genetics on Microbial Structure and Inferred Function.Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome.Comparison of normalization methods for the analysis of metagenomic gene abundance data.Viromes of one year old infants reveal the impact of birth mode on microbiome diversity.Asymptomatic Intestinal Colonization with Protist Blastocystis Is Strongly Associated with Distinct Microbiome Ecological Patterns.Microbiomes of North American Triatominae: The Grounds for Chagas Disease Epidemiology.

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Normalization and microbial differential abundance strategies depend upon data characteristics.

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P2860

Proportionality: a valid alternative to correlation for relative data

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

Differential expression analysis for sequence count data

Bioconductor: open software development for computational biology and bioinformatics

Moving pictures of the human microbiome

phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data

Obesity alters gut microbial ecology

QIIME allows analysis of high-throughput community sequencing data

A human gut microbial gene catalogue established by metagenomic sequencing

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

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