QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species.
about
Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studiesSNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids.De Novo assembly of the Japanese flounder (Paralichthys olivaceus) spleen transcriptome to identify putative genes involved in immunity.Transcriptome analysis of crucian carp (Carassius auratus), an important aquaculture and hypoxia-tolerant species.A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato.Development of high-throughput SNP-based genotyping in Acacia auriculiformis x A. mangium hybrids using short-read transcriptome dataHigh quality SNPs/Indels mining and characterization in ginger from ESTs data base.4Pipe4--A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information.Haplotype and minimum-chimerism consensus determination using short sequence data.Genomic analysis of the native European Solanum species, S. dulcamara.HaploSNPer: a web-based allele and SNP detection tool.Using mtDNA sequences to estimate SNP parameters in ESTs.Expressed sequence tags (ESTs) from immune tissues of turbot (Scophthalmus maximus) challenged with pathogensTowards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions.Genomic resources and tools for gene function analysis in potato.Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlxPerl module and PISE wrappers for the integrated analysis of sequence data and SNP features.An efficient method for developing SNP markers based on EST data combined with high resolution melting (HRM) analysisTargeted approach to identify genetic loci associated with evolved dioxin tolerance in Atlantic killifish (Fundulus heteroclitus).A high-throughput data mining of single nucleotide polymorphisms in Coffea species expressed sequence tags suggests differential homeologous gene expression in the allotetraploid Coffea arabica.Eggplant Resistance to the Ralstonia solanacearum Species Complex Involves Both Broad-Spectrum and Strain-Specific Quantitative Trait Loci.A transcriptomic analysis of gene expression in the venom gland of the snake Bothrops alternatus (urutu).An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora.Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.).A pipeline for high throughput detection and mapping of SNPs from EST databasesSNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects.Genomic introgression mapping of field-derived multiple-anthelmintic resistance in Teladorsagia circumcinctaSingle nucleotide polymorphism discovery from expressed sequence tags in the waterflea Daphnia magna.Transcriptome sequencing and de novo analysis for Yesso scallop (Patinopecten yessoensis) using 454 GS FLX.Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database.SNP markers retrieval for a non-model species: a practical approach.Predicting the impact of alternative splicing on plant MADS domain protein functionGeneration and analysis of expressed sequence tags in the extreme large genomes Lilium and TulipaA combined strategy involving Sanger and 454 pyrosequencing increases genomic resources to aid in the management of reproduction, disease control and genetic selection in the turbot (Scophthalmus maximus)Tomato breeding in the genomics era: insights from a SNP array.RNA-seq based SNPs in some agronomically important oleiferous lines of Brassica rapa and their use for genome-wide linkage mapping and specific-region fine mapping.Mining of haplotype-based expressed sequence tag single nucleotide polymorphisms in citrus.Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication.Reliable in silico identification of sequence polymorphisms and their application for extending the genetic map of sugar beet (Beta vulgaris).Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.).
P2860
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P2860
QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species.
description
2006 nî lūn-bûn
@nan
2006 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2006 թվականի հոտեմբերին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
QualitySNP: a pipeline for det ...... diploid and polyploid species.
@ast
QualitySNP: a pipeline for det ...... diploid and polyploid species.
@en
type
label
QualitySNP: a pipeline for det ...... diploid and polyploid species.
@ast
QualitySNP: a pipeline for det ...... diploid and polyploid species.
@en
prefLabel
QualitySNP: a pipeline for det ...... diploid and polyploid species.
@ast
QualitySNP: a pipeline for det ...... diploid and polyploid species.
@en
P2093
P2860
P356
P1433
P1476
QualitySNP: a pipeline for det ...... diploid and polyploid species.
@en
P2093
C Gerard van der Linden
Jack A M Leunissen
Jifeng Tang
Roeland E Voorrips
P2860
P2888
P356
10.1186/1471-2105-7-438
P50
P577
2006-10-09T00:00:00Z
P5875
P6179
1014338447