Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping. - Wikidata - awgldk - TriplyDB

Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

http://www.wikidata.org/entity/Q33268304

about

Concentration and length dependence of DNA looping in transcriptional regulation Spacing between core recognition motifs determines relative orientation of AraR monomers on bipartite operators Interconvertible lac repressor-DNA loops revealed by single-molecule experiments Design and analysis of LacI-repressed promoters and DNA-looping in a cyanobacterium First-principles calculation of DNA looping in tethered particle experiments.Plectoneme tip bubbles: coupled denaturation and writhing in supercoiled DNA.Effect of temperature on the intrinsic flexibility of DNA and its interaction with architectural proteins.Self-consistent theory of transcriptional control in complex regulatory architectures.Multiple LacI-mediated loops revealed by Bayesian statistics and tethered particle motion.DNA curvature and flexibility in vitro and in vivo.What controls DNA looping?Gene repression by minimal lac loops in vivo.DNA topology confers sequence specificity to nonspecific architectural proteins.Interplay of protein and DNA structure revealed in simulations of the lac operon.Poly(dA:dT)-rich DNAs are highly flexible in the context of DNA looping.DNA modeling reveals an extended lac repressor conformation in classic in vitro binding assays.Transcription by the numbers redux: experiments and calculations that surprise.High-resolution mapping of architectural DNA binding protein facilitation of a DNA repression loop in Escherichia coli.Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA.Interplay of Protein Binding Interactions, DNA Mechanics, and Entropy in DNA Looping Kinetics Sequence dependence of transcription factor-mediated DNA looping Single-molecule manipulation reveals supercoiling-dependent modulation of lac repressor-mediated DNA looping.Mechanism of promoter repression by Lac repressor-DNA loops.Computational analysis of looping of a large family of highly bent DNA by LacI.Structural insights into the role of architectural proteins in DNA looping deduced from computer simulations.Tetramer opening in LacI-mediated DNA looping.Quantitation of the DNA tethering effect in long-range DNA looping in vivo and in vitro using the Lac and λ repressors.DNA sequence-dependent mechanics and protein-assisted bending in repressor-mediated loop formation.Quantitative methods for measuring DNA flexibility in vitro and in vivo.The thermodynamics of DNA loop formation, from J to Z.Eukaryotic HMGB proteins as replacements for HU in E. coli repression loop formation.Probing the elasticity of DNA on short length scales by modeling supercoiling under tension.Mesoscale modeling of multi-protein-DNA assemblies: the role of the catabolic activator protein in Lac-repressor-mediated looping Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte Carlo simulations.DNA nanomechanics: how proteins deform the double helix.DNA cyclization and looping in the wormlike limit: Normal modes and the validity of the harmonic approximation.

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Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

http://www.wikidata.org/entity/Q33268304

description

2006 nî lūn-bûn

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2006 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2006 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年论文

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name

Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

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Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

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Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

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type

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Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

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Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

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Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

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Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

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Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

@en

Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

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JOURNAL.PONE.0000136

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Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping.

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Abbye E McEwen

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Donald M Crothers

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Yongli Zhang

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P2860

Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI.

Crystal structure of lac repressor core tetramer and its implications for DNA looping

Crystal structure of the lactose operon repressor and its complexes with DNA and inducer

Supercoiling of the DNA template during transcription

Statistical-mechanical theory of DNA looping.

DNA looping and the helical repeat in vitro and in vivo: effect of HU protein and enhancer location on Hin invertasome assembly.

Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation

Dual architectural roles of HU: formation of flexible hinges and rigid filaments

A new approach to DNA bending by polyamines and its implication in DNA condensation.

In vivo DNA loops in araCBAD: size limits and helical repeat

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scholarly article

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10.1371/JOURNAL.PONE.0000136

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1

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Stephen D. Levene

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2006-12-27T00:00:00Z

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6596268

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