Estimating the annotation error rate of curated GO database sequence annotations. - Wikidata - awgldk - TriplyDB

Estimating the annotation error rate of curated GO database sequence annotations.

Estimating the annotation error rate of curated GO database sequence annotations.

http://www.wikidata.org/entity/Q33285442

about

Annotation error in public databases: misannotation of molecular function in enzyme superfamilies The what, where, how and why of gene ontology--a primer for bioinformaticians High-throughput functional annotation and data mining with the Blast2GO suite Protein function prediction: towards integration of similarity metrics.Discovery of function in the enolase superfamily: D-mannonate and d-gluconate dehydratases in the D-mannonate dehydratase subgroup Detection of gene annotations and protein-protein interaction associated disorders through transitive relationships between integrated annotations Can inferred provenance and its visualisation be used to detect erroneous annotation? A case study using UniProtKB An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKB The annotation and the usage of scientific databases could be improved with public issue tracker software Getting started in structural phylogenomics Co-evolutionary networks of genes and cellular processes across fungal species ProbCD: enrichment analysis accounting for categorization uncertainty Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach Filtering "genic" open reading frames from genomic DNA samples for advanced annotation.Linking genome-scale metabolic modeling and genome annotation Protein function prediction by massive integration of evolutionary analyses and multiple data sources.Utility and Limitations of Using Gene Expression Data to Identify Functional Associations Local function conservation in sequence and structure space Rapid annotation of anonymous sequences from genome projects using semantic similarities and a weighting scheme in gene ontology.Enzyme classification with peptide programs: a comparative study.ProbFAST: Probabilistic functional analysis system tool.Recognition of Protein-coding Genes Based on Z-curve Algorithms Re-annotation is an essential step in systems biology modeling of functional genomics data Using deep RNA sequencing for the structural annotation of the Laccaria bicolor mycorrhizal transcriptome.Biocuration in the structure-function linkage database: the anatomy of a superfamily The use of EST expression matrixes for the quality control of gene expression data Quality of computationally inferred gene ontology annotations.Metabolomic strategies for the identification of new enzyme functions and metabolic pathways Mining GO annotations for improving annotation consistency Curation accuracy of model organism databases Analysis of the peroxiredoxin family: using active-site structure and sequence information for global classification and residue analysis.In silico assigned resistance genes confer Bifidobacterium with partial resistance to aminoglycosides but not to β-lactams.Ortholog identification in the presence of domain architecture rearrangement.An integrative method for identifying the over-annotated protein-coding genes in microbial genomes.Lineage-specific sequence evolution and exon edge conservation partially explain the relationship between evolutionary rate and expression level in A. thaliana Enhancement of crystallization with nucleotide ligands identified by dye-ligand affinity chromatography.Theoretical prediction and experimental verification of protein-coding genes in plant pathogen genome Agrobacterium tumefaciens strain C58.Predicting disease-related subnetworks for type 1 diabetes using a new network activity score.ATP-binding Cassette (ABC) Transport System Solute-binding Protein-guided Identification of Novel d-Altritol and Galactitol Catabolic Pathways in Agrobacterium tumefaciens C58.A task-based approach for Gene Ontology evaluation.

P2860

Q21145347-2ADC2FEB-50DB-4CB6-9FBA-81A6FA6E8A43 Q24595988-DD196428-1822-43B6-B852-E4CC66A49B28 Q24657550-D6CDD4D9-AEE9-4B5E-A90D-640393E03D17 Q27687386-BF000EFC-E4C1-48FE-8E55-D93D131F21E5 Q28485821-17841493-12E2-4279-B822-DDDA76365EC6 Q28643974-B97E5B24-E7D7-410C-8E67-07B4FB1BF2DB Q28674160-0FFA6A59-924B-4562-9AB8-871BDA902A1D Q28727972-B40800BA-BC1A-48DE-BAFD-CF16BDBDD673 Q28743905-99E44383-6796-46BF-8575-E2F2966024FE Q28749140-65A0B766-136D-4ED3-B723-44DB7623980A Q28752105-3F57ABB5-D153-4C92-85E2-552AC556A353 Q28756079-218FC6AB-72C4-441C-B3D9-7972CA268648 Q29036401-F6D2EC6F-FAFD-4ACF-894F-6613371613F2 Q30405569-B7AC69B3-606C-4365-A417-3138881895EA Q30412056-CF4659D5-818B-40AB-A241-83CA80F76F14 Q30604353-39DDF986-2562-400D-ACC8-A1BB6E274EA0 Q31147883-1B116165-87F2-4F5F-9807-11D9419A870A Q33349433-9EDAA586-8A5C-4A30-81E9-741504F8364D Q33413078-8807F905-C9CE-41E8-8BC3-4C9BA3C94BF2 Q33486721-04B53A5F-39D2-4A5B-920C-95F18B7A52F2 Q33547691-631092E9-D0C5-4A86-AF4A-A4EA928C42CB Q33565370-5C968A8C-5BDB-4A8F-9AB0-3407379F35C5 Q33586222-1F8B536E-5387-4D1F-831B-A0B9DEBD7ADD Q33631122-2955FA2A-A09D-408E-AA4D-B88184F5001C Q33787500-946BB8AB-8493-4D92-876A-3BA25E11ED4C Q34193573-A5D3D131-24A9-4E69-AA54-71BD0D1B350E Q34302143-995EB9BF-20AA-4ECA-810E-DAD54915A55D Q34342551-9B3BE606-1120-4DA2-9148-C216166B90EF Q34357922-7073AF75-7281-47C1-941A-6662D8604146 Q34392540-0B2C363B-F0A2-4886-B744-79A277AEBDA5 Q34727787-C7A48DB1-1E48-4A2C-A9CE-54997114699D Q35064275-C2FF36A5-2589-4683-8D43-E9573F4DFCDF Q35226472-732CE8F3-50CA-4C3B-9E66-EB049D538391 Q35570198-9789BF41-0791-4ADB-9D97-1BC048ED15E3 Q35781197-C9059B48-AF7A-4367-8C94-CED5034963DB Q36031447-D11D2B46-9D8C-4844-AC3B-CF61550B035D Q36227037-B4D5DC87-3F64-4F3D-96BB-6A0880DF483E Q36283250-411B1A7A-C854-41EA-9F4B-3D46DA96F3DA Q36323499-E042F0C2-E195-4167-90FB-EF5D3C50EE2F Q36786095-038C92F6-13E3-469E-B3EC-B341D7EF0090

P2860

Estimating the annotation error rate of curated GO database sequence annotations.

http://www.wikidata.org/entity/Q33285442

description

2007 nî lūn-bûn

@nan

2007 թուականի Մայիսին հրատարակուած գիտական յօդուած

@hyw

2007 թվականի մայիսին հրատարակված գիտական հոդված

@hy

2007年の論文

@ja

2007年論文

@yue

2007年論文

@zh-hant

2007年論文

@zh-hk

2007年論文

@zh-mo

2007年論文

@zh-tw

2007年论文

@wuu

name

Estimating the annotation error rate of curated GO database sequence annotations.

@ast

Estimating the annotation error rate of curated GO database sequence annotations.

@en

Estimating the annotation error rate of curated GO database sequence annotations.

@nl

type

label

Estimating the annotation error rate of curated GO database sequence annotations.

@ast

Estimating the annotation error rate of curated GO database sequence annotations.

@en

Estimating the annotation error rate of curated GO database sequence annotations.

@nl

prefLabel

Estimating the annotation error rate of curated GO database sequence annotations.

@ast

Estimating the annotation error rate of curated GO database sequence annotations.

@en

Estimating the annotation error rate of curated GO database sequence annotations.

@nl

P1433

Q33285442-468E8E1A-800F-405D-B68E-EB809A6602EC

P1476

Q33285442-4816158C-DDF8-4214-9453-FF94F3BFEB55

P2093

Q33285442-407FE96B-3B48-45E8-AB53-EA1CC17FA89C

Q33285442-E39D5497-E299-4A97-A0F8-2C6730BC60E1

P2860

Q33285442-17D191CC-0624-4D42-824D-28D1EA3DB6D5

Q33285442-276A9407-4877-43EB-A97F-7DEC80E76852

Q33285442-54EA3E0C-ECA3-4FA1-BB13-935BE2A77203

Q33285442-5C1EC6F3-8688-4096-B6E0-25514EE4DB64

Q33285442-6B2D764D-E4D7-4B32-8F3E-7C87BA6FBC8A

Q33285442-9E4E1DE2-709B-4A19-B03C-708E3B663A28

Q33285442-AA509763-AB89-494A-B1C2-B099285CD67E

Q33285442-AFD4F061-1CC2-460E-B4AB-FCEF7E721B52

Q33285442-B3895490-127F-428A-9F4A-B2577DD530C0

Q33285442-B4247CA7-F93F-4D61-A6F9-91460CCF39DD

P2888

Q33285442-4A1068A0-3A8D-446A-8A01-886A61493D88

P304

Q33285442-1D87A213-C198-4240-967E-AD149B968ABD

P31

Q33285442-28BD2D22-148F-435D-8415-D8DF0A57F440

P356

Q33285442-A78A945F-2DDF-4345-805D-034AC52AE546

P478

Q33285442-67103565-5DAB-45BA-BBFC-9433313E4C80

P50

Q33285442-BFFF8605-CDEE-402A-A9F9-FA00275638E2

P577

Q33285442-BF0255B7-2A94-4434-88DB-B1E2D0526DED

P5875

Q33285442-C79CE7E6-8C25-4DE0-9F5A-4B0CA66A191E

P6179

Q33285442-3E58F6B8-7A8D-4CFD-8478-13BDDEEE96EE

P698

Q33285442-891F42F3-881F-4910-B3D6-841272FE7C4E

P921

Q33285442-C24362DB-D7A8-42B1-8C23-B12C3740EC00

P932

Q33285442-697DFFFB-929D-44F4-A8B7-D0C76E19E592

P356

1471-2105-8-170

P1433

BMC Bioinformatics

P1476

Estimating the annotation error rate of curated GO database sequence annotations.

@en

P2093

Craig E Jones

http://www.w3.org/2001/XMLSchema#string

Ute Baumann

http://www.w3.org/2001/XMLSchema#string

P2860

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

GOPET: a tool for automated predictions of Gene Ontology terms.

The Universal Protein Resource (UniProt)

GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes

Automated methods of predicting the function of biological sequences using GO and BLAST.

Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology

Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption.

GOblet: a platform for Gene Ontology annotation of anonymous sequence data.

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

P2888

1471-2105-8-170

P304

170

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1186/1471-2105-8-170

http://www.w3.org/2001/XMLSchema#string

P478

8

http://www.w3.org/2001/XMLSchema#string

P50

Alfred L. Brown

P577

2007-05-22T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

6313752

http://www.w3.org/2001/XMLSchema#string

P6179

1018777295

http://www.w3.org/2001/XMLSchema#string

P698

17519041

http://www.w3.org/2001/XMLSchema#string

P921

P932

1892569

http://www.w3.org/2001/XMLSchema#string