The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results. - Wikidata - awgldk - TriplyDB

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

http://www.wikidata.org/entity/Q33391589

about

Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies Quantitative proteomics study of larval settlement in the Barnacle Balanus amphitrite In vivo versus in vitro protein abundance analysis of Shigella dysenteriae type 1 reveals changes in the expression of proteins involved in virulence, stress and energy metabolism.Estimating relative abundances of proteins from shotgun proteomics data.Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MS(E))The Seminal fluid proteome of the polyandrous Red junglefowl offers insights into the molecular basis of fertility, reproductive ageing and domestication.Overview of software options for processing, analysis and interpretation of mass spectrometric proteomic data.WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis Quantitative proteomics of complex mixtures.Label-free quantification using MALDI mass spectrometry: considerations and perspectives.Protein-to-mRNA ratios are conserved between Pseudomonas aeruginosa strains Predicting the dynamics of protein abundance.Comparative Sperm Proteomics in Mouse Species with Divergent Mating Systems.Deletion of the Cel48S cellulase from Clostridium thermocellum.Isobaric labeling and data normalization without requiring protein quantitation The necessity of adjusting tests of protein category enrichment in discovery proteomics Computational analysis of T cell receptor signaling and ligand discrimination--past, present, and future.Highly reproducible label free quantitative proteomic analysis of RNA polymerase complexes.Protein analysis by shotgun/bottom-up proteomics Proteomic View of Interactions of Shiga Toxin-Producing Escherichia coli with the Intestinal Environment in Gnotobiotic Piglets.Quantitative strategies to fuel the merger of discovery and hypothesis-driven shotgun proteomics.Design and initial characterization of the SC-200 proteomics standard mixture.Impact of routinely employed procedures for tissue processing on the proteomic analysis of formalin-fixed paraffin-embedded tissue.Proteomic analysis of the palmitate-induced myotube secretome reveals involvement of the annexin A1-formyl peptide receptor 2 (FPR2) pathway in insulin resistance Label-free LC-MS/MS quantitative analysis of aqueous humor from keratoconic and normal eyes.A proteomic profiling of laser-microdissected lung adenocarcinoma cells of early lepidic-types.Proteomic and protein interaction network analysis of human T lymphocytes during cell-cycle entry PaxDb, a database of protein abundance averages across all three domains of life Accuracy and Reproducibility in Quantification of Plasma Protein Concentrations by Mass Spectrometry without the Use of Isotopic Standards Development stage-specific proteomic profiling uncovers small, lineage specific proteins most abundant in the Aspergillus Fumigatus conidial proteome.Proteomic Analysis of Dhh1 Complexes Reveals a Role for Hsp40 Chaperone Ydj1 in Yeast P-Body Assembly.miR-200c dampens cancer cell migration via regulation of protein kinase A subunits.Label-free protein quantitation using weighted spectral counting Obligate Biotroph Pathogens of the Genus Albugo Are Better Adapted to Active Host Defense Compared to Niche Competitors.Improving the Production of L-Phenylalanine by Identifying Key Enzymes Through Multi-Enzyme Reaction System in Vitro Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome.Analysis of the proteome of intracellular Shigella flexneri reveals pathways important for intracellular growth.Chemoproteomic analysis of intertissue and interspecies isoform diversity of AMP-activated protein kinase (AMPK).Mass spectrometry-based label-free quantitative proteomics.Statistical approach to protein quantification.

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The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

http://www.wikidata.org/entity/Q33391589

description

2008 nî lūn-bûn

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2008 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

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2008 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2008年の論文

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2008年学术文章

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2008年学术文章

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2008年学术文章

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2008年学术文章

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2008年学术文章

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2008年學術文章

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BMC Bioinformatics

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The APEX Quantitative Proteomi ...... m LC-MS/MS proteomics results.

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Alan R Rodrigues

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Alexander I Saeed

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Erik S Ferlanti

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John C Braisted

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Rembert Pieper

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Robert D Fleischmann

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Rong Wang

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Scott N Peterson

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Shih-Ting Huang

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Srilatha Kuntumalla

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P2860

Large-scale proteomic analysis of the human spliceosome

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

Mass spectrometry-based proteomics

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

Quantitation of peptides and proteins by matrix-assisted laser desorption/ionization mass spectrometry using (18)O-labeled internal standards.

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1471-2105-9-529

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Christine Vogel

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