MOODS: fast search for position weight matrix matches in DNA sequences. - Wikidata - awgldk - TriplyDB

MOODS: fast search for position weight matrix matches in DNA sequences.

MOODS: fast search for position weight matrix matches in DNA sequences.

http://www.wikidata.org/entity/Q33505917

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ParA and ParB coordinate chromosome segregation with cell elongation and division during Streptomyces sporulation.DNA-dependent formation of transcription factor pairs alters their binding specificity Lagging-strand replication shapes the mutational landscape of the genome Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)Uniform, optimal signal processing of mapped deep-sequencing data.Target analysis by integration of transcriptome and ChIP-seq data with BETA.Motif-Based Text Mining of Microbial Metagenome Redundancy Profiling Data for Disease Classification.Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis.FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis.Patterns of recombination activity on mouse chromosome 11 revealed by high resolution mapping.UVB-induced gene expression in the skin of Xiphophorus maculatus Jp 163 B.Short DNA sequence patterns accurately identify broadly active human enhancers Sequence-based classification using discriminatory motif feature selection.Glucocorticoid receptor binds half sites as a monomer and regulates specific target genes Androgen receptor expression predicts breast cancer survival: the role of genetic and epigenetic events.PePPER: a webserver for prediction of prokaryote promoter elements and regulons HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.Comprehensive meta-analysis of Signal Transducers and Activators of Transcription (STAT) genomic binding patterns discerns cell-specific cis-regulatory modules Identification of putative TAL effector targets of the citrus canker pathogens shows functional convergence underlying disease development and defense response.Androgen receptor driven transcription in molecular apocrine breast cancer is mediated by FoxA1.Transcription factor binding sites are highly enriched within microRNA precursor sequences.Using whole-genome sequences of the LG/J and SM/J inbred mouse strains to prioritize quantitative trait genes and nucleotides.Genome-wide mapping of Hif-1α binding sites in zebrafish Ensembl regulation resources.RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse Exploring comprehensive within-motif dependence of transcription factor binding in Escherichia coli.Clinical implications of human population differences in genome-wide rates of functional genotypes Whole-genome mutational burden analysis of three pluripotency induction methods.CardioTF, a database of deconstructing transcriptional circuits in the heart system.The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana.Asymmetry in skeletal distribution of mouse hematopoietic stem cell clones and their equilibration by mobilizing cytokines.Coregulation of genetic programs by the transcription factors NFIB and STAT5.Computational approaches to interpreting genomic sequence variation.Saturation mutagenesis of a CepR binding site as a means to identify new quorum-regulated promoters in Burkholderia cenocepacia.PeakXus: comprehensive transcription factor binding site discovery from ChIP-Nexus and ChIP-Exo experiments.chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data.Quorum Sensing Regulators Are Required for Metabolic Fitness in Vibrio parahaemolyticus.Fast motif matching revisited: high-order PWMs, SNPs and indels.Clonal Analysis of Cells with Cellular Barcoding: When Numbers and Sizes Matter.Nuc-ErbB3 regulates H3K27me3 levels and HMT activity to establish epigenetic repression during peripheral myelination

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MOODS: fast search for position weight matrix matches in DNA sequences.

http://www.wikidata.org/entity/Q33505917

description

2009 nî lūn-bûn

@nan

2009 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի սեպտեմբերին հրատարակված գիտական հոդված

@hy

2009年の論文

@ja

2009年学术文章

@wuu

2009年学术文章

@zh-cn

2009年学术文章

@zh-hans

2009年学术文章

@zh-my

2009年学术文章

@zh-sg

2009年學術文章

@yue

name

MOODS: fast search for position weight matrix matches in DNA sequences.

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MOODS: fast search for position weight matrix matches in DNA sequences.

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type

label

MOODS: fast search for position weight matrix matches in DNA sequences.

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MOODS: fast search for position weight matrix matches in DNA sequences.

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prefLabel

MOODS: fast search for position weight matrix matches in DNA sequences.

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MOODS: fast search for position weight matrix matches in DNA sequences.

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MOODS: fast search for position weight matrix matches in DNA sequences.

@en

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Cinzia Pizzi

http://www.w3.org/2001/XMLSchema#string

Janne Korhonen

http://www.w3.org/2001/XMLSchema#string

Pasi Rastas

http://www.w3.org/2001/XMLSchema#string

Petri Martinmäki

http://www.w3.org/2001/XMLSchema#string

P2860

Biopython: freely available Python tools for computational molecular biology and bioinformatics

Fast index based algorithms and software for matching position specific scoring matrices

Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison

Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli

TRANSFAC: transcriptional regulation, from patterns to profiles

TFBS: Computational framework for transcription factor binding site analysis.

Methods for calculating the probabilities of finding patterns in sequences.

Finding significant matches of position weight matrices in linear time.

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3181-3182

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scholarly article

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10.1093/BIOINFORMATICS/BTP554

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23

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25

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2009-09-22T00:00:00Z

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26830629

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19773334

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2778336

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