Learning rates and states from biophysical time series: a Bayesian approach to model selection and single-molecule FRET data - Wikidata - awgldk - TriplyDB

Learning rates and states from biophysical time series: a Bayesian approach to model selection and single-molecule FRET data

Learning rates and states from biophysical time series: a Bayesian approach to model selection and single-molecule FRET data

http://www.wikidata.org/entity/Q33518206

about

Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data smFRET studies of the 'encounter' complexes and subsequent intermediate states that regulate the selectivity of ligand binding Ribosomal initiation complex-driven changes in the stability and dynamics of initiation factor 2 regulate the fidelity of translation initiation Single-molecule imaging of non-equilibrium molecular ensembles on the millisecond timescale Single-molecule analysis reveals the kinetics and physiological relevance of MutL-ssDNA binding FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET Dynamically varying interactions between heregulin and ErbB proteins detected by single-molecule analysis in living cells Extracting conformational memory from single-molecule kinetic data.BOBA FRET: bootstrap-based analysis of single-molecule FRET data Dividing organelle tracks into Brownian and motor-driven intervals by variational maximization of the Bayesian evidence.Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis.Bayesian model selection applied to the analysis of fluorescence correlation spectroscopy data of fluorescent proteins in vitro and in vivo Sequential data assimilation for single-molecule FRET photon-counting data.Hierarchically-coupled hidden Markov models for learning kinetic rates from single-molecule data EF-G catalyzed translocation dynamics in the presence of ribosomal frameshifting stimulatory signals.PHF1 Tudor and N-terminal domains synergistically target partially unwrapped nucleosomes to increase DNA accessibility Improving FRET-based monitoring of single chemomechanical rotary motors at work.Single molecule fluorescence methodologies for investigating transcription factor binding kinetics to nucleosomes and DNA.Unraveling the Thousand Word Picture: An Introduction to Super-Resolution Data Analysis.Signal recognition particle-ribosome binding is sensitive to nascent chain length.Structure and dynamics of a processive Brownian motor: the translating ribosome A new method for inferring hidden markov models from noisy time sequences.Label-free single-molecule detection of DNA-hybridization kinetics with a carbon nanotube field-effect transistor.Multiple LacI-mediated loops revealed by Bayesian statistics and tethered particle motion.Characterization of dark quencher chromophores as nonfluorescent acceptors for single-molecule FRET.Single-molecule FRET studies of HIV TAR-DNA hairpin unfolding dynamics.Single-molecule conformational dynamics of a biologically functional hydroxocobalamin riboswitch.Analyzing single-molecule time series via nonparametric Bayesian inference Transfer RNA-mediated regulation of ribosome dynamics during protein synthesis.Real-time submillisecond single-molecule FRET dynamics of freely diffusing molecules with liposome tethering.Visualization and functional dissection of coaxial paired SpoIIIE channels across the sporulation septum Single-molecule bioelectronics.Classic maximum entropy recovery of the average joint distribution of apparent FRET efficiency and fluorescence photons for single-molecule burst measurements.Quantitative Connection between Ensemble Thermodynamics and Single-Molecule Kinetics: A Case Study Using Cryogenic Electron Microscopy and Single-Molecule Fluorescence Resonance Energy Transfer Investigations of the Ribosome.Conformational transitions in the glycine-bound GluN1 NMDA receptor LBD via single-molecule FRET.Decoding Single Molecule Time Traces with Dynamic Disorder.An Introduction to Infinite HMMs for Single-Molecule Data Analysis.Translation initiation factor 3 regulates switching between different modes of ribosomal subunit joining.Structural Analysis of Multi-Helical RNAs by NMR-SAXS/WAXS: Application to the U4/U6 di-snRNA.Single-molecule colocalization FRET evidence that spliceosome activation precedes stable approach of 5' splice site and branch site.

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Learning rates and states from biophysical time series: a Bayesian approach to model selection and single-molecule FRET data

http://www.wikidata.org/entity/Q33518206

description

2009 nî lūn-bûn

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2009 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

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2009 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2009年の論文

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Learning rates and states from ...... and single-molecule FRET data

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J.BPJ.2009.09.031

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Biophysical Journal

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Learning rates and states from ...... and single-molecule FRET data

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Chris H Wiggins

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Jake M Hofman

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Multiple events on single molecules: unbiased estimation in single-molecule biophysics.

Intersubunit coordination in a homomeric ring ATPase.

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tRNA dynamics on the ribosome during translation.

Correlating structural dynamics and function in single ribozyme molecules.

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Kinesin walks hand-over-hand.

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