A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments
about
Evaluation of algorithm performance in ChIP-seq peak detectionProtein-DNA binding in high-resolutionNeural crest deletion of Dlx3 leads to major dentin defects through down-regulation of DsppFeatures that define the best ChIP-seq peak calling algorithmsWaveSeq: a novel data-driven method of detecting histone modification enrichments using wavelets.A co-localization model of paired ChIP-seq data using a large ENCODE data set enables comparison of multiple samples.ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip dataDROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq dataNEXT-peak: a normal-exponential two-peak model for peak-calling in ChIP-seq data.Statistical Issues in the Analysis of ChIP-Seq and RNA-Seq Data.De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly.Saturation analysis of ChIP-seq data for reproducible identification of binding peaks.Q&A: ChIP-seq technologies and the study of gene regulationHPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data.Processing and analyzing ChIP-seq data: from short reads to regulatory interactions.An improved ChIP-seq peak detection system for simultaneously identifying post-translational modified transcription factors by combinatorial fusion, using SUMOylation as an example.OccuPeak: ChIP-Seq peak calling based on internal background modellingDiscovering cooperative relationships of chromatin modifications in human T cells based on a proposed closeness measureseqMINER: an integrated ChIP-seq data interpretation platform.Shape-based peak identification for ChIP-SeqChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.An integrated pipeline for the genome-wide analysis of transcription factor binding sites from ChIP-Seq.An integrated ChIP-seq analysis platform with customizable workflowsZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions.Efficiently identifying genome-wide changes with next-generation sequencing data.Genome-wide analysis of ETS-family DNA-binding in vitro and in vivoVDA, a method of choosing a better algorithm with fewer validationsA strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements.Improving ChIP-seq peak-calling for functional co-regulator binding by integrating multiple sources of biological informationSystematic evaluation of factors influencing ChIP-seq fidelityPinpointing transcription factor binding sites from ChIP-seq data with SeqSite.The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding.Discovering homotypic binding events at high spatial resolution.Combining multiple ChIP-seq peak detection systems using combinatorial fusionComprehensive meta-analysis of Signal Transducers and Activators of Transcription (STAT) genomic binding patterns discerns cell-specific cis-regulatory modulesChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions.De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasetsGenome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-SeqDIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture modelsPolyaPeak: detecting transcription factor binding sites from ChIP-seq using peak shape information
P2860
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P2860
A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments
description
2009 nî lūn-bûn
@nan
2009 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2009 թվականի դեկտեմբերին հրատարակված գիտական հոդված
@hy
2009年の論文
@ja
2009年論文
@yue
2009年論文
@zh-hant
2009年論文
@zh-hk
2009年論文
@zh-mo
2009年論文
@zh-tw
2009年论文
@wuu
name
A practical comparison of meth ...... sites in ChIP-seq experiments
@ast
A practical comparison of meth ...... sites in ChIP-seq experiments
@en
A practical comparison of meth ...... sites in ChIP-seq experiments.
@nl
type
label
A practical comparison of meth ...... sites in ChIP-seq experiments
@ast
A practical comparison of meth ...... sites in ChIP-seq experiments
@en
A practical comparison of meth ...... sites in ChIP-seq experiments.
@nl
prefLabel
A practical comparison of meth ...... sites in ChIP-seq experiments
@ast
A practical comparison of meth ...... sites in ChIP-seq experiments
@en
A practical comparison of meth ...... sites in ChIP-seq experiments.
@nl
P2093
P2860
P50
P356
P1433
P1476
A practical comparison of meth ...... sites in ChIP-seq experiments
@en
P2093
Riitta Lahesmaa
Soile Tuomela
Sunil Raghav
P2860
P2888
P356
10.1186/1471-2164-10-618
P407
P577
2009-12-18T00:00:00Z
P5875
P6179
1050566307