RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures. - Wikidata - awgldk - TriplyDB

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.

http://www.wikidata.org/entity/Q33575051

about

Automated 3D structure composition for large RNAs RNA CoSSMos: Characterization of Secondary Structure Motifs--a searchable database of secondary structure motifs in RNA three-dimensional structures Structurally conserved five nucleotide bulge determines the overall topology of the core domain of human telomerase RNA The structural stabilization of the three-way junction by Mg(II) represents the first step in the folding of a group II intron Crystallographic characterization of CCG repeats Annotating RNA motifs in sequences and alignments Bioinformatics Study of Structural Patterns in Plant MicroRNA Precursors Structural database resources for biological macromolecules.The HIV-2 Rev-response element: determining secondary structure and defining folding intermediates.RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures.RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs.Architecture of human telomerase RNA.The 3' untranslated region of Pea Enation Mosaic Virus contains two T-shaped, ribosome-binding, cap-independent translation enhancers.Topological constraints are major determinants of tRNA tertiary structure and dynamics and provide basis for tertiary folding cooperativity.The nuclear magnetic resonance of CCCC RNA reveals a right-handed helix, and revised parameters for AMBER force field torsions improve structural predictions from molecular dynamics.WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs R3D-BLAST: a search tool for similar RNA 3D substructures.Ribosomal frameshifting in the CCR5 mRNA is regulated by miRNAs and the NMD pathway.Determination of the secondary structure of group II bulge loops using the fluorescent probe 2-aminopurine.GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules RAG-3D: a search tool for RNA 3D substructures GARN2: coarse-grained prediction of 3D structure of large RNA molecules by regret minimization.Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation.Modulating RNA Alignment Using Directional Dynamic Kinks: Application in Determining an Atomic-Resolution Ensemble for a Hairpin using NMR Residual Dipolar Couplings.Retrotransposon Ty1 RNA contains a 5'-terminal long-range pseudoknot required for efficient reverse transcription.URS DataBase: universe of RNA structures and their motifs.JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas.RNA Bricks--a database of RNA 3D motifs and their interactions Coarse grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges.An innate twist between Crick's wobble and Watson-Crick base pairs.Revisiting GNRA and UNCG folds: U-turns versus Z-turns in RNA hairpin loops.Analyzing and building nucleic acid structures with 3DNA.Modelling the three-dimensional structure of the right-terminal domain of pospiviroids.Computational Methods for Modeling Aptamers and Designing Riboswitches.R3D-BLAST2: an improved search tool for similar RNA 3D substructures.F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly.Influence of two bulge loops on the stability of RNA duplexes.

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RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.

http://www.wikidata.org/entity/Q33575051

description

2010 nî lūn-bûn

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2010 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2010 թվականի մայիսին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

RNA FRABASE 2.0: an advanced w ...... agments within RNA structures.

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RNA FRABASE 2.0: an advanced w ...... agments within RNA structures.

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RNA FRABASE 2.0: an advanced w ...... agments within RNA structures.

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1471-2105-11-231

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BMC Bioinformatics

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RNA FRABASE 2.0: an advanced w ...... agments within RNA structures.

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Marek Blazewicz

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Mariusz Popenda

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P2860

The Protein Data Bank

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

Tools for the automatic identification and classification of RNA base pairs

Columba: an integrated database of proteins, structures, and annotations.

Bulged adenosine influence on the RNA duplex conformation in solution

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

RNA STRAND: the RNA secondary structure and statistical analysis database.

FR3D: finding local and composite recurrent structural motifs in RNA 3D structures

MODOMICS: a database of RNA modification pathways. 2008 update.

Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns

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1471-2105-11-231

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231

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scholarly article

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10.1186/1471-2105-11-231

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11

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Jacek Błażewicz

Marta Szachniuk

Ryszard Adamiak

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2010-05-06T00:00:00Z

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44589389

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1048503968

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20459631

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P932

2873543

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