Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia - Wikidata - awgldk - TriplyDB

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia

http://www.wikidata.org/entity/Q33617186

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Gas Fermentation-A Flexible Platform for Commercial Scale Production of Low-Carbon-Fuels and Chemicals from Waste and Renewable Feedstocks PacBio Sequencing and Its Applications Analysis of the Core Genome and Pan-Genome of Autotrophic Acetogenic Bacteria Genome editing of Clostridium autoethanogenum using CRISPR/Cas9 Insights into CO2 Fixation Pathway of Clostridium autoethanogenum by Targeted Mutagenesis Reconstruction of an acetogenic 2,3-butanediol pathway involving a novel NADPH-dependent primary-secondary alcohol dehydrogenase Genome sequence of Plasmopara viticola and insight into the pathogenic mechanism Long-read, whole-genome shotgun sequence data for five model organisms Sequence data for Clostridium autoethanogenum using three generations of sequencing technologies.Third generation sequencing technologies applied to diagnostic microbiology: benefits and challenges in applications and data analysis.Complete Genome Sequence of Streptomyces sp. Sge12, Which Produces Antibacterial and Fungicidal Activities Complete Genome Sequence of Pelosinus sp. Strain UFO1 Assembled Using Single-Molecule Real-Time DNA Sequencing Technology.Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences.Completing bacterial genome assemblies: strategy and performance comparisons.Genome-scale resources for Thermoanaerobacterium saccharolyticum.Complete Genome Sequence of Rnf- and Cytochrome-Containing Autotrophic Acetogen Clostridium aceticum DSM 1496.Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.Function of the CRISPR-Cas System of the Human Pathogen Clostridium difficile.Industrial Acetogenic Biocatalysts: A Comparative Metabolic and Genomic Analysis.Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum Use of single molecule sequencing for comparative genomics of an environmental and a clinical isolate of Clostridium difficile ribotype 078.Gas fermentation: cellular engineering possibilities and scale up Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation.Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium Dramatic performance of Clostridium thermocellum explained by its wide range of cellulase modalities.Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.Near-Complete Genome Sequence of Thalassospira sp. Strain KO164 Isolated from a Lignin-Enriched Marine Sediment Microcosm.Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells.Lysogeny in nature: mechanisms, impact and ecology of temperate phages.CoLoRMap: Correcting Long Reads by Mapping short reads.A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies.Genome-directed analysis of prophage excision, host defence systems, and central fermentative metabolism in Clostridium pasteurianum.Harnessing heterologous and endogenous CRISPR-Cas machineries for efficient markerless genome editing in Clostridium Extending CRISPR-Cas9 Technology from Genome Editing to Transcriptional Engineering in the Genus Clostridium.Metabolic engineering of Clostridium autoethanogenum for selective alcohol production.Evidence for a hexaheteromeric methylenetetrahydrofolate reductase in Moorella thermoacetica.Energy Conservation Associated with Ethanol Formation from H2 and CO2 in Clostridium autoethanogenum Involving Electron Bifurcation.Syngas Biorefinery and Syngas Utilization.H2 drives metabolic rearrangements in gas-fermenting Clostridium autoethanogenum.Genome comparison of different Zymomonas mobilis strains provides insights on conservation of the evolution.

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Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia

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2014 nî lūn-bûn

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2014 թուականի Մարտին հրատարակուած գիտական յօդուած

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2014 թվականի մարտին հրատարակված գիտական հոդված

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Biotechnology for Biofuels

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Comparison of single-molecule ...... industrial relevant Clostridia

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Asela Dassanayake

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Sashini De Tissera

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Shilpa Nagaraju

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Simón Segovia

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A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes.

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.

The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats

The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation

REAPR: a universal tool for genome assembly evaluation

Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum

Repetitive DNA and next-generation sequencing: computational challenges and solutions

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

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