pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. - Wikidata - awgldk - TriplyDB

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree.

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree.

http://www.wikidata.org/entity/Q33733643

about

Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer Diversity, ecology and biogeochemistry of cyst-forming acantharia (radiolaria) in the oceans Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella Integrative analysis of environmental sequences using MEGAN4 A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis Extracting functional trends from whole genome duplication events using comparative genomics Two new computational methods for universal DNA barcoding: a benchmark using barcode sequences of bacteria, archaea, animals, fungi, and land plants MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm The human mycobiome in health and disease The evolution of silicon transporters in diatoms REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil Assigning and visualizing germline genes in antibody repertoires Microbially influenced corrosion communities associated with fuel-grade ethanol environments Composite bacterial hopanoids and their microbial producers across oxygen gradients in the water column of the California Current Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria Sequencing our way towards understanding global eukaryotic biodiversity Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood Species From Feces: Order-Wide Identification of Chiroptera From Guano and Other Non-Invasive Genetic Samples.A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses.Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance.Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.A machine learning approach for viral genome classification.Influence of cobalamin scarcity on diatom molecular physiology and identification of a cobalamin acquisition protein Species-level analysis of DNA sequence data from the NIH Human Microbiome Project.Structure-constrained sparse canonical correlation analysis with an application to microbiome data analysis Edge principal components and squash clustering: using the special structure of phylogenetic placement data for sample comparison.Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding.VARIABLE SELECTION FOR SPARSE DIRICHLET-MULTINOMIAL REGRESSION WITH AN APPLICATION TO MICROBIOME DATA ANALYSIS.A Bayesian approach to inferring the phylogenetic structure of communities from metagenomic data.Long-term forest soil warming alters microbial communities in temperate forest soils Beyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis.A general species delimitation method with applications to phylogenetic placements.Negative binomial mixed models for analyzing microbiome count data Lactobacillus crispatus dominant vaginal microbiome is associated with inhibitory activity of female genital tract secretions against Escherichia coli.Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communities The vaginal microbiota of pregnant women who subsequently have spontaneous preterm labor and delivery and those with a normal delivery at term.

P2860

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P2860

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree.

http://www.wikidata.org/entity/Q33733643

description

2010 nî lūn-bûn

@nan

2010 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հոտեմբերին հրատարակված գիտական հոդված

@hy

2010年の論文

@ja

2010年論文

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2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

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2010年論文

@zh-tw

2010年论文

@wuu

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pplacer: linear time maximum-l ...... s onto a fixed reference tree.

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BMC Bioinformatics

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E Virginia Armbrust

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Frederick A Matsen

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Robin B Kodner

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P2860

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

A simple, fast, and accurate method of phylogenomic inference

phyloXML: XML for evolutionary biology and comparative genomics

The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples

Taxonomic distribution of large DNA viruses in the sea

Genome sequencing in microfabricated high-density picolitre reactors

Genetic organization of the psbAD region in phages infecting marine Synechococcus strains

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

Metagenomic analysis of the human distal gut microbiome

A core gut microbiome in obese and lean twins

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1471-2105-11-538

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