Translation efficiency is determined by both codon bias and folding energy.
about
The distribution of synonymous codon choice in the translation initiation region of dengue virusStrong purifying selection at synonymous sites in D. melanogasterDecoding mechanisms by which silent codon changes influence protein biogenesis and functionMultiple roles of the coding sequence 5' end in gene expression regulationSelection for reduced translation costs at the intronic 5' end in fungiHow do bacteria tune translation efficiency?Rational manipulation of mRNA folding free energy allows rheostat control of pneumolysin production by Streptococcus pneumoniaeSelecting against accidental RNA interactionsGlobal or local? Predicting secondary structure and accessibility in mRNAsAssociation between translation efficiency and horizontal gene transfer within microbial communitiesDietary nitrogen alters codon bias and genome composition in parasitic microorganismsCo-expression of the protease furin in Nicotiana benthamiana leads to efficient processing of latent transforming growth factor-β1 into a biologically active proteinA genome-scale integration and analysis of Lactococcus lactis translation data.Leveraging the complementary nature of RNA-Seq and shotgun proteomics data.Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation.Mean of the typical decoding rates: a new translation efficiency index based on the analysis of ribosome profiling data.Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data AloneBalanced codon usage optimizes eukaryotic translational efficiency.Efficient Translation of Pelargonium line pattern virus RNAs Relies on a TED-Like 3´-Translational Enhancer that Communicates with the Corresponding 5´-Region through a Long-Distance RNA-RNA Interaction.SoFIA: a data integration framework for annotating high-throughput datasets.Application of sorting and next generation sequencing to study 5΄-UTR influence on translation efficiency in Escherichia coliProteome and Secretome Analysis Reveals Differential Post-transcriptional Regulation of Toll-like Receptor Responses.Entrainment to periodic initiation and transition rates in a computational model for gene translationComparative genomic analysis of translation initiation mechanisms for genes lacking the Shine-Dalgarno sequence in prokaryotes.Differential codon adaptation between dsDNA and ssDNA phages in Escherichia coli.How Changes in Anti-SD Sequences Would Affect SD Sequences in Escherichia coli and Bacillus subtilis.Frequent GU wobble pairings reduce translation efficiency in Plasmodium falciparumN1-methyl-pseudouridine in mRNA enhances translation through eIF2α-dependent and independent mechanisms by increasing ribosome densityDeterminants of initiation codon selection during translation in mammalian cellsCodon preference optimization increases heterologous PEDF expression.Quantifying position-dependent codon usage bias.Codon usage variability determines the correlation between proteome and transcriptome fold changes.Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants.Reduced stability of mRNA secondary structure near the translation-initiation site in dsDNA viruses.Visual gene developer: a fully programmable bioinformatics software for synthetic gene optimization.Genome-scale analysis of translation elongation with a ribosome flow model.The effect of tRNA levels on decoding times of mRNA codons.The dynamics of supply and demand in mRNA translation.Sequence features of E. coli mRNAs affect their degradationRegulation of human formyl peptide receptor 1 synthesis: role of single nucleotide polymorphisms, transcription factors, and inflammatory mediators
P2860
Q24498611-679CF146-8E28-4AB8-B82B-EFEA9A841476Q24810381-51F8AD98-17FB-4230-879F-8402B7CB6087Q26821951-1393DB00-0970-4F11-9B88-A6DA06C6EDB9Q27008936-BBB3A314-374D-4901-ABBC-EF347CF783E2Q27302027-5A44D123-2AC2-480B-99B4-B1BF3A51BFD3Q28083131-B0BACE42-F377-4920-BE06-1F3F6862BDD1Q28544890-9963455C-65E6-4E1B-8B8F-6E5D5B90C184Q28595575-09DF130A-1FE0-4D52-BAB8-6882D7FA23A4Q28727954-64154CEF-6F88-4578-A31D-2C8ACC52C152Q28743700-BFB8A1F6-C056-46C7-A9D8-B3DB404032ECQ28821402-C0A77259-3816-40E7-A8BB-2EEA7C2A0238Q28821869-A5CD3AC5-AB67-4B2F-BA0D-F08041392D76Q30678474-15CC33D3-5E6B-464D-827A-8D5BBBB133A8Q30855943-5312B10D-BEC7-49CB-875F-CEC2A9C42F0EQ30858065-20F929DA-3D4B-48FB-A677-B67C03605ECBQ30873166-4BE01CA0-7F39-4852-BAFD-9E1175E01EF4Q30952178-A4379893-EE47-4AAE-BF47-AB4BDD1432D8Q31053878-EF67100A-0D0B-45C4-9DF9-5DB142CDADBBQ31068103-E3450837-7C58-4085-9EFB-B10185DC334DQ31096686-BAF78589-4F4E-4358-B839-67509DE3D2BCQ33558117-B55CFDF2-D047-4B16-9A8B-F8F75B243D8DQ33569840-0CB10A8E-AEAC-4E61-A447-D7F12C87B9B8Q33572739-B6CC4F17-D83D-4A3D-BBDB-DBB7B660788BQ33580404-6F7A6A99-B873-4D8A-8D87-A4DD30A9F7F5Q33654347-CEDAB3A1-B7D8-43E9-B0FD-288714CC4EFDQ33667330-D0CF9190-9CBF-40A2-AEBE-F9FBE3E1D83EQ33677861-53BA7EF2-CA3E-4DCE-9387-127B49A3D468Q33741117-09B3BB25-2F3A-4693-9931-344B308980E4Q33760873-39B872E1-5B7B-4F09-818C-FF05928F62A9Q33770029-171A1F76-451A-4D3E-92B0-39D97C490B2DQ33801895-A23DE58E-8AF5-42C2-AE8F-CD97EDDF085FQ33830070-2FD6E809-1597-4B02-8741-3983717FD20FQ33838359-9332632F-5E70-4B7E-9591-AC762E4FB2B9Q33840146-18A49C6C-96F8-46F4-B305-ECFBDD5B77C3Q33994056-92ABE5EF-0C2A-4D58-83CE-70DC79E65B19Q34016175-9F528EE0-3838-4FCE-B57A-DC47B70C9634Q34044490-BD9DD6A9-9C2B-4F39-ABD8-9C7AB2E5C67AQ34055229-6424BE39-E0CB-443A-9623-083AE0940D35Q34098244-95D61219-BB94-4946-8D11-6A960DEC4D42Q34103302-50993034-F3FD-4B1B-AABB-2475D93CEB53
P2860
Translation efficiency is determined by both codon bias and folding energy.
description
2010 nî lūn-bûn
@nan
2010 թուականի Փետրուարին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի փետրվարին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
Translation efficiency is determined by both codon bias and folding energy.
@ast
Translation efficiency is determined by both codon bias and folding energy.
@en
type
label
Translation efficiency is determined by both codon bias and folding energy.
@ast
Translation efficiency is determined by both codon bias and folding energy.
@en
prefLabel
Translation efficiency is determined by both codon bias and folding energy.
@ast
Translation efficiency is determined by both codon bias and folding energy.
@en
P2860
P356
P1476
Translation efficiency is determined by both codon bias and folding energy.
@en
P2093
Martin Kupiec
Yedael Y Waldman
P2860
P304
P356
10.1073/PNAS.0909910107
P407
P577
2010-02-02T00:00:00Z