GraphProt: modeling binding preferences of RNA-binding proteins. - Wikidata - awgldk - TriplyDB

GraphProt: modeling binding preferences of RNA-binding proteins.

GraphProt: modeling binding preferences of RNA-binding proteins.

http://www.wikidata.org/entity/Q33741982

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Specificity and nonspecificity in RNA-protein interactions High-throughput characterization of protein-RNA interactions Affinity regression predicts the recognition code of nucleic acid–binding proteins Integrating Epigenomics into the Understanding of Biomedical Insight A deep learning framework for modeling structural features of RNA-binding protein targets.Computational Methods for CLIP-seq Data Processing.Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.RCK: accurate and efficient inference of sequence- and structure-based protein-RNA binding models from RNAcompete data.Bioinformatic tools for analysis of CLIP ribonucleoprotein data Lineage-specific splicing of a brain-enriched alternative exon promotes glioblastoma progression.PTRcombiner: mining combinatorial regulation of gene expression from post-transcriptional interaction maps Locus-specific targeting to the X chromosome revealed by the RNA interactome of CTCF.Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.Design and bioinformatics analysis of genome-wide CLIP experiments.Co-evolution of Bacterial Ribosomal Protein S15 with Diverse mRNA Regulatory Structures.From benchmarking HITS-CLIP peak detection programs to a new method for identification of miRNA-binding sites from Ago2-CLIP data RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach A deep boosting based approach for capturing the sequence binding preferences of RNA-binding proteins from high-throughput CLIP-seq data.Recognizing RNA structural motifs in HT-SELEX data for ribosomal protein S15.RNASeqMetaDB: a database and web server for navigating metadata of publicly available mouse RNA-Seq datasets RBP-Var: a database of functional variants involved in regulation mediated by RNA-binding proteins.Modeling the combined effect of RNA-binding proteins and microRNAs in post-transcriptional regulation The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression Mechanism of β-actin mRNA Recognition by ZBP1 Biological and bioinformatical approaches to study crosstalk of long-non-coding RNAs and chromatin-modifying proteins.CLIP: viewing the RNA world from an RNA-protein interactome perspective.Revealing protein-lncRNA interaction Associating transcription factors and conserved RNA structures with gene regulation in the human brain.RAIN: RNA-protein Association and Interaction Networks.A novel method for the identification of conserved structural patterns in RNA: From small scale to high-throughput applications.RNAcommender: genome-wide recommendation of RNA-protein interactions.Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins.PredcircRNA: computational classification of circular RNA from other long non-coding RNA using hybrid features.Identification of high-confidence RNA regulatory elements by combinatorial classification of RNA-protein binding sites.The RBPome: where the brains meet the brawn.'Oming in on RNA-protein interactions.ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data.Towards enhanced and interpretable clustering/classification in integrative genomics.DynaMIT: the dynamic motif integration toolkit.Discriminating cirRNAs from other lncRNAs using a hierarchical extreme learning machine (H-ELM) algorithm with feature selection.

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P2860

GraphProt: modeling binding preferences of RNA-binding proteins.

http://www.wikidata.org/entity/Q33741982

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2014 nî lūn-bûn

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2014 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2014 թվականի հունվարին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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GraphProt: modeling binding preferences of RNA-binding proteins.

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Daniel Maticzka

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Sita J Lange

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P2860

RNAalifold: improved consensus structure prediction for RNA alignments.

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering

The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1

Relatedness of an RNA-binding motif in human immunodeficiency virus type 1 TAR RNA-binding protein TRBP to human P1/dsI kinase and Drosophila staufen

GraphClust: alignment-free structural clustering of local RNA secondary structures

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

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