Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: significant role of Asn ladder. - Wikidata - awgldk - TriplyDB

Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: significant role of Asn ladder.

Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: significant role of Asn ladder.

http://www.wikidata.org/entity/Q33852045

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Mapping the conformational dynamics and pathways of spontaneous steric zipper Peptide oligomerization Aromatic Cross-Strand Ladders Control the Structure and Stability of β-Rich Peptide Self-Assembly Mimics Molecular Mechanism of Thioflavin-T Binding to the Surface of β-Rich Peptide Self-Assemblies Self-assembly of functional, amphipathic amyloid monolayers by the fungal hydrophobin EAS Oligomeric interfaces under the lens: gemini Probing protein aggregation using discrete molecular dynamics Low molecular weight oligomers of amyloid peptides display beta-barrel conformations: a replica exchange molecular dynamics study in explicit solvent.Are current atomistic force fields accurate enough to study proteins in crowded environments?Modeling the Alzheimer Abeta17-42 fibril architecture: tight intermolecular sheet-sheet association and intramolecular hydrated cavities Designing a nanotube using naturally occurring protein building blocks.Molecular dynamics simulations to gain insights into the stability and morphologies of K3 oligomers from beta2-microglobulin.Association thermodynamics and conformational stability of beta-sheet amyloid beta(17-42) oligomers: effects of E22Q (Dutch) mutation and charge neutralization Probing the effect of amino-terminal truncation for Abeta1-40 peptides.Genomic clustering and homology between HET-S and the NWD2 STAND protein in various fungal genomes Amyloid-β peptide structure in aqueous solution varies with fragment size.Simple continuous and discrete models for simulating replica exchange simulations of protein folding.Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35.Structural diversity and initial oligomerization of PrP106-126 studied by replica-exchange and conventional molecular dynamics simulations Interplay of sequence, topology and termini charge in determining the stability of the aggregates of GNNQQNY mutants: a molecular dynamics study.Interpeptide interactions induce helix to strand structural transition in Abeta peptides Simulating replica exchange simulations of protein folding with a kinetic network model.A peptide study of the relationship between the collagen triple-helix and amyloid A Protocol for the Design of Protein and Peptide Nanostructure Self-Assemblies Exploiting Synthetic Amino Acids.Islet Amyloid Polypeptide: Structure, Function, and Pathophysiology.A molecular dynamics study of the structural and dynamical properties of putative arsenic substituted lipid bilayers.Hydration effects on the HET-s prion and amyloid-beta fibrillous aggregates, studied with three-dimensional molecular theory of solvation Computational simulations of the early steps of protein aggregation.Probing energetics of Abeta fibril elongation by molecular dynamics simulations.Replica exchange simulations of the thermodynamics of Abeta fibril growth.Molecular dynamics simulations of Ibuprofen binding to Abeta peptides Side chain interactions can impede amyloid fibril growth: replica exchange simulations of Abeta peptide mutant.Structure and thermodynamics of colloidal protein cluster formation: comparison of square-well and simple dipolar models.A promiscuous prion: efficient induction of [URE3] prion formation by heterologous prion domains.Nanomechanics of functional and pathological amyloid materials.Nanostructure and stability of calcitonin amyloids.GNNQQNY--investigation of early steps during amyloid formation.Investigating the mechanism of peptide aggregation: insights from mixed monte carlo-molecular dynamics simulations.Structural insights on the potential significance of the twin Asn-residue found at the base of the hemagglutinin 2 stalk in all influenza A H1N1 strains: a computational study with clinical implications Crystal Structure of the DFNKF Segment of Human Calcitonin Unveils Aromatic Interactions between Phenylalanines.Structural diversity of the soluble trimers of the human amylin(20-29) peptide revealed by molecular dynamics simulations.

P2860

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P2860

Energy landscape of amyloidogenic peptide oligomerization by parallel-tempering molecular dynamics simulation: significant role of Asn ladder.

http://www.wikidata.org/entity/Q33852045

description

2005 nî lūn-bûn

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Energy landscape of amyloidoge ...... ignificant role of Asn ladder.

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Energy landscape of amyloidoge ...... ignificant role of Asn ladder.

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Proceedings of the National Academy of Sciences of the United States of America

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Energy landscape of amyloidoge ...... ignificant role of Asn ladder.

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P2093

Chung-Jung Tsai

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Ehud Gazit

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Hui-Hsu Gavin Tsai

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Kannan Gunasekaran

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Meital Reches

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P2860

A census of glutamine/asparagine-rich regions: implications for their conserved function and the prediction of novel prions

High-resolution molecular structure of a peptide in an amyloid fibril determined by magic angle spinning NMR spectroscopy

All-atom empirical potential for molecular modeling and dynamics studies of proteins

VMD: visual molecular dynamics

The amyloid hypothesis of Alzheimer's disease: progress and problems on the road to therapeutics

Protein misfolding, evolution and disease

An amyloid-forming peptide from the yeast prion Sup35 reveals a dehydrated beta-sheet structure for amyloid

Amyloidogenic hexapeptide fragment of medin: homology to functional islet amyloid polypeptide fragments

A structural model for Alzheimer's beta -amyloid fibrils based on experimental constraints from solid state NMR

Common structure of soluble amyloid oligomers implies common mechanism of pathogenesis

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