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TargetRNA2: identifying targets of small regulatory RNAs in bacteria

TargetRNA2: identifying targets of small regulatory RNAs in bacteria

http://www.wikidata.org/entity/Q33860759

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The target spectrum of SdsR small RNA in Salmonella Genome-Wide Discovery of Putative sRNAs in Paracoccus denitrificans Expressed under Nitrous Oxide Emitting Conditions Global analysis of posttranscriptional regulation by GlmY and GlmZ in enterohemorrhagic Escherichia coli O157:H7 Detecting RNA-RNA interactions in E. coli using a modified CLASH method sRNA-mediated activation of gene expression by inhibition of 5'-3' exonucleolytic mRNA degradation Construction of a fur null mutant and RNA-sequencing provide deeper global understanding of the Aliivibrio salmonicida Fur regulon Non-coding RNA regulation in pathogenic bacteria located inside eukaryotic cells.Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3.Large-scale identification of small noncoding RNA with strand-specific deep sequencing and characterization of a novel virulence-related sRNA in Brucella melitensis.The prrF-encoded small regulatory RNAs are required for iron homeostasis and virulence of Pseudomonas aeruginosa Systematic analysis of the role of bacterial Hfq-interacting sRNAs in the response to antibiotics.Small Open Reading Frames, Non-Coding RNAs and Repetitive Elements in Bradyrhizobium japonicum USDA 110.Microbial Community Composition Impacts Pathogen Iron Availability during Polymicrobial Infection.Systematic characterization of artificial small RNA-mediated inhibition of Escherichia coli growth Identification of bacterial sRNA regulatory targets using ribosome profiling.sRNATarBase 3.0: an updated database for sRNA-target interactions in bacteria.Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.A Small Regulatory RNA Contributes to the Preferential Colonization of Escherichia coli O157:H7 in the Large Intestine in Response to a Low DNA Concentration.Transcriptomic analysis of staphylococcal sRNAs: insights into species-specific adaption and the evolution of pathogenesis.An assessment of bacterial small RNA target prediction programs SRD: a Staphylococcus regulatory RNA database.A comprehensive benchmark of RNA-RNA interaction prediction tools for all domains of life.Role of Non-coding Regulatory RNA in the Virulence of Human Pathogenic Vibrios.Regulation of Neisseria meningitidis cytochrome bc1 components by NrrF, a Fur-controlled small noncoding RNA.A novel small RNA is important for biofilm formation and pathogenicity in Pseudomonas aeruginosa.The small RNA ReaL: a novel regulatory element embedded in the Pseudomonas aeruginosa quorum sensing networks.A computational strategy for the search of regulatory small RNAs in Actinobacillus pleuropneumoniae.Characterizing the transcriptional adaptation of Staphylococcus aureus to stationary phase growth.RNA-Sequencing Reveals the Progression of Phage-Host Interactions between φR1-37 and Yersinia enterocolitica.A transposon-derived small RNA regulates gene expression in Salmonella Typhimurium EsrE-A yigP Locus-Encoded Transcript-Is a 3′ UTR sRNA Involved in the Respiratory Chain of E. coli.Hfq links translation repression to stress-induced mutagenesis in E. coli.EsrE-A yigP Locus-Encoded Transcript-Is a 3' UTR sRNA Involved in the Respiratory Chain of E. coli.The novel sRNA s015 improves nisin yield by increasing acid tolerance of Lactococcus lactis F44.Streptococcus sanguinis Non-coding csRNAs Negatively Regulate Expression of Type IV Pilus Retraction ATPase PilT and Biofilm Formation.Small RNAs of Haloferax mediterranei: Identification and Potential Involvement in Nitrogen Metabolism.Meeting report: Regulating with RNA in Bacteria 2013.A new cis-encoded sRNA, BsrH, regulating the expression of hemH gene in Brucella abortus 2308.Non-coding RNAs Potentially Controlling Cell Cycle in the Model Caulobacter crescentus: A Bioinformatic Approach.Small RNA profiling in Mycobacterium tuberculosis identifies MrsI as necessary for an anticipatory iron sparing response.

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P2860

TargetRNA2: identifying targets of small regulatory RNAs in bacteria

http://www.wikidata.org/entity/Q33860759

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2014 nî lūn-bûn

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2014 թուականի Ապրիլին հրատարակուած գիտական յօդուած

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2014 թվականի ապրիլին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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TargetRNA2: identifying targets of small regulatory RNAs in bacteria

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TargetRNA2: identifying targets of small regulatory RNAs in bacteria

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TargetRNA2: identifying targets of small regulatory RNAs in bacteria

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TargetRNA2: identifying targets of small regulatory RNAs in bacteria

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TargetRNA2: identifying targets of small regulatory RNAs in bacteria

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Brian Tjaden

http://www.w3.org/2001/XMLSchema#string

Jonathan Livny

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Mary Beth Kery

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Monica Feldman

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P2860

Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation

ViennaRNA Package 2.0

Target prediction for small, noncoding RNAs in bacteria

RNApredator: fast accessibility-based prediction of sRNA targets

Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

Regulation by small RNAs in bacteria: expanding frontiers

Clustal W and Clustal X version 2.0

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis

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10.1093/NAR/GKU317

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42

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2014-04-21T00:00:00Z

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