Estimation of allele frequency and association mapping using next-generation sequencing data - Wikidata - awgldk - TriplyDB

Estimation of allele frequency and association mapping using next-generation sequencing data

Estimation of allele frequency and association mapping using next-generation sequencing data

http://www.wikidata.org/entity/Q33929681

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Host-Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap Use of genome-wide heterospecific single-nucleotide polymorphisms to estimate linkage disequilibrium in rhesus and cynomolgus macaques Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus Single Nucleotide Polymorphism (SNP) Detection and Genotype Calling from Massively Parallel Sequencing (MPS) Data Robust demographic inference from genomic and SNP data SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation Quantifying population genetic differentiation from next-generation sequencing data.Estimating individual admixture proportions from next generation sequencing data Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data.Characterizing bias in population genetic inferences from low-coverage sequencing data.Efficient digest of high-throughput sequencing data in a reproducible report.Association analysis using next-generation sequence data from publicly available control groups: the robust variance score statistic Population genetic analysis of bi-allelic structural variants from low-coverage sequence data with an expectation-maximization algorithm.Hierarchical Bayesian model for rare variant association analysis integrating genotype uncertainty in human sequence data.ANGSD: Analysis of Next Generation Sequencing Data.Likelihood-based complex trait association testing for arbitrary depth sequencing data.Genotype-Frequency Estimation from High-Throughput Sequencing Data.Estimating IBD tracts from low coverage NGS data.Streamlined analysis of duplex sequencing data with Du Novo.From next-generation resequencing reads to a high-quality variant data set.Genotype Calling from Population-Genomic Sequencing Data.LINE Insertion Polymorphisms are Abundant but at Low Frequencies across Populations of Anolis carolinensis.Next generation characterisation of cereal genomes for marker discovery.Evaluation and optimisation of indel detection workflows for ion torrent sequencing of the BRCA1 and BRCA2 genes Dealing with paralogy in RADseq data: in silico detection and single nucleotide polymorphism validation in Robinia pseudoacacia L.A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data.Natural selection affects multiple aspects of genetic variation at putatively neutral sites across the human genome.Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data.Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly species Genetic architecture of vitamin B12 and folate levels uncovered applying deeply sequenced large datasets.SNP discovery by illumina-based transcriptome sequencing of the olive and the genetic characterization of Turkish olive genotypes revealed by AFLP, SSR and SNP markers Assessing the effect of sequencing depth and sample size in population genetics inferences Exome and transcriptome sequencing of Aedes aegypti identifies a locus that confers resistance to Brugia malayi and alters the immune response.Museum samples reveal rapid evolution by wild honey bees exposed to a novel parasite Practical low-coverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species.Yak whole-genome resequencing reveals domestication signatures and prehistoric population expansions Exome sequencing-driven discovery of coding polymorphisms associated with common metabolic phenotypes.Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species.

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P2860

Estimation of allele frequency and association mapping using next-generation sequencing data

http://www.wikidata.org/entity/Q33929681

description

2011 nî lūn-bûn

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2011 թուականի Յունիսին հրատարակուած գիտական յօդուած

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2011 թվականի հունիսին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

@zh-mo

2011年論文

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2011年论文

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name

Estimation of allele frequency ...... ext-generation sequencing data

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Estimation of allele frequency ...... ext-generation sequencing data

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type

label

Estimation of allele frequency ...... ext-generation sequencing data

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Estimation of allele frequency ...... ext-generation sequencing data

@en

prefLabel

Estimation of allele frequency ...... ext-generation sequencing data

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Estimation of allele frequency ...... ext-generation sequencing data

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BMC Bioinformatics

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Estimation of allele frequency ...... ext-generation sequencing data

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Geng Tian

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Gitte Andersen

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Kirk E Lohmueller

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Su Yeon Kim

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Tao Jiang

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Torben Jorgensen

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Yingrui Li

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P2860

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

Statistical tests of neutrality of mutations.

Hitchhiking under positive Darwinian selection

Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls

Exome sequencing identifies the cause of a mendelian disorder

A map of human genome variation from population-scale sequencing

Mapping short DNA sequencing reads and calling variants using mapping quality scores

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

SOAP2: an improved ultrafast tool for short read alignment

Recent and ongoing selection in the human genome

P2888

1471-2105-12-231

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231

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scholarly article

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10.1186/1471-2105-12-231

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12

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Oluf Borbye Pedersen

Thorfinn Korneliussen

Anders Albrechtsen

Daniel R. Witte

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2011-06-11T00:00:00Z

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51210096

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1047861938

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21663684

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3212839

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