Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions. - Wikidata - awgldk - TriplyDB

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions.

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions.

http://www.wikidata.org/entity/Q33980339

about

The second decade of 3C technologies: detailed insights into nuclear organization Genetic variation and the de novo assembly of human genomes Analysis methods for studying the 3D architecture of the genome An Overview of Genome Organization and How We Got There: from FISH to Hi-C It's more than stamp collecting: how genome sequencing can unify biological research Advances in genome studies in plants and animals Genome assembly from synthetic long read clouds Synthetic long-read sequencing reveals intraspecies diversity in the human microbiome De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds Genome evolution in the allotetraploid frog Xenopus laevis.Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.High-quality genome (re)assembly using chromosomal contact data.Construction of a map-based reference genome sequence for barley, Hordeum vulgare L Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.New advances in sequence assembly.Sequencing and de novo assembly of a near complete indica rice genome.Whole-Genome Restriction Mapping by "Subhaploid"-Based RAD Sequencing: An Efficient and Flexible Approach for Physical Mapping and Genome Scaffolding.Scaffolding of long read assemblies using long range contact information.Species-level deconvolution of metagenome assemblies with Hi-C-based contact probability maps Decoding the role of chromatin architecture in development: coming closer to the end of the tunnel.Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures.Genome-wide mapping and analysis of chromosome architecture.In vitro, long-range sequence information for de novo genome assembly via transposase contiguity Whole-genome haplotyping approaches and genomic medicine.The Hitchhiker's guide to Hi-C analysis: practical guidelines.Filling annotation gaps in yeast genomes using genome-wide contact maps.Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms Pattern and process in the evolution of the sole dioecious member of Brassicaceae.Best Practices in Insect Genome Sequencing: What Works and What Doesn't.Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools.Accurate identification of centromere locations in yeast genomes using Hi-C.Complete haplotype phasing of the MHC and KIR loci with targeted HaploSeq.Chromosome-scale shotgun assembly using an in vitro method for long-range linkage A streamlined tethered chromosome conformation capture protocol.In Situ Hi-C Library Preparation for Plants to Study Their Three-Dimensional Chromatin Interactions on a Genome-Wide Scale.Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays.CRISPR-CAS9 D10A nickase target-specific fluorescent labeling of double strand DNA for whole genome mapping and structural variation analysis.The life cycle of a genome project: perspectives and guidelines inspired by insect genome projects A pathway-centric view of spatial proximity in the 3D nucleome across cell lines.Reconstructing complex regions of genomes using long-read sequencing technology.

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Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions.

http://www.wikidata.org/entity/Q33980339

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2013年の論文

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Nature Biotechnology

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Chromosome-scale scaffolding o ...... sed on chromatin interactions.

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Andrew Adey

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Ruolan Qiu

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Rupali P Patwardhan

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P2860

Initial sequencing and analysis of the human genome

The oyster genome reveals stress adaptation and complexity of shell formation

Finishing the euchromatic sequence of the human genome

Initial sequencing and comparative analysis of the mouse genome

Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line

The genomic and transcriptomic landscape of a HeLa cell line

Cluster analysis and display of genome-wide expression patterns

De novo assembly of human genomes with massively parallel short read sequencing

Basic local alignment search tool

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1119-1125

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10.1038/NBT.2727

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12

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31

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Joshua N Burton

Jacob O Kitzman

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