MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases. - Wikidata - awgldk - TriplyDB

MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases.

MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases.

http://www.wikidata.org/entity/Q34122951

about

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models Achieving Metabolic Flux Analysis for S. cerevisiae at a Genome-Scale: Challenges, Requirements, and Considerations Software applications for flux balance analysis Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays.MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics Informatic system for a global tissue-fluid biorepository with a graph theory-oriented graphical user interface Combining chemoinformatics with bioinformatics: in silico prediction of bacterial flavor-forming pathways by a chemical systems biology approach "reverse pathway engineering"Computational approaches for microalgal biofuel optimization: a review Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond Reconstruction of the metabolic network of Pseudomonas aeruginosa to interrogate virulence factor synthesis.Linking genome-scale metabolic modeling and genome annotation Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes.From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web-resources for mass spectral plant metabolomics A systematic comparison of the MetaCyc and KEGG pathway databases.MetaNET--a web-accessible interactive platform for biological metabolic network analysis Characterising Complex Enzyme Reaction Data.Efficient Reconstruction of Predictive Consensus Metabolic Network Models.The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize.MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks.MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.Recent progress in the development of metabolome databases for plant systems biology.Reconciliation of metabolites and biochemical reactions for metabolic networks.Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli.Thermophilic lignocellulose deconstruction.Software platforms to facilitate reconstructing genome-scale metabolic networks.Nitrogen-use efficiency in maize (Zea mays L.): from 'omics' studies to metabolic modelling.Systematic applications of metabolomics in metabolic engineering.Metabolic network discovery by top-down and bottom-up approaches and paths for reconciliation.BiKEGG: a COBRA toolbox extension for bridging the BiGG and KEGG databases.Critical assessment of genome-scale metabolic networks: the need for a unified standard.Genome scale models of yeast: towards standardized evaluation and consistent omic integration.Thermodynamic Constraints Improve Metabolic Networks.Metabolic modeling of clostridia: current developments and applications.A systematic reconstruction and constraint-based analysis of Leishmania donovani metabolic network: identification of potential antileishmanial drug targets.Long non-coding RNA in glioma: signaling pathways.13C-Metabolic Flux Analysis: An Accurate Approach to Demystify Microbial Metabolism for Biochemical Production.Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks.Designing overall stoichiometric conversions and intervening metabolic reactions.A review of parameters and heuristics for guiding metabolic pathfinding Capturing the response of Clostridium acetobutylicum to chemical stressors using a regulated genome-scale metabolic model.

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P2860

MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases.

http://www.wikidata.org/entity/Q34122951

description

2012 nî lūn-bûn

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BMC Bioinformatics

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MetRxn: a knowledgebase of met ...... etabolic models and databases.

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Akhil Kumar

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Costas D Maranas

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Patrick F Suthers

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P2860

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

The ENZYME database in 2000

From genomics to chemical genomics: new developments in KEGG

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

IntEnz, the integrated relational enzyme database

BRENDA, the enzyme information system in 2011

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

KEGG for representation and analysis of molecular networks involving diseases and drugs

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10.1186/1471-2105-13-6

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13

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