Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation. - Wikidata - awgldk - TriplyDB

Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation.

Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation.

http://www.wikidata.org/entity/Q34133399

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Lessons from the lysozyme of phage T4 Determination of solvent content in cavities in IL-1beta using experimentally phased electron density Structural Rigidity of a Large Cavity-containing Protein Revealed by High-pressure Crystallography Crystallographic Study of Hydration of an Internal Cavity in Engineered Proteins with Buried Polar or Ionizable Groups Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift Use of experimental crystallographic phases to examine the hydration of polar and nonpolar cavities in T4 lysozyme Structure-Function Perturbation and Dissociation of Tetrameric Urate Oxidase by High Hydrostatic Pressure High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase Cavities determine the pressure unfolding of proteins Structural, energetic, and dynamic responses of the native state ensemble of staphylococcal nuclease to cavity-creating mutations.Coupling of pressure-induced structural shifts to spectral changes in a yellow fluorescent protein Molecular level probing of preferential hydration and its modulation by osmolytes through the use of pyranine complexed to hemoglobin.Statistical survey of the buried waters in the Protein Data Bank.Size and sequence and the volume change of protein folding.Role of cavities and hydration in the pressure unfolding of T4 lysozyme.Cavity as a source of conformational fluctuation and high-energy state: high-pressure NMR study of a cavity-enlarged mutant of T4 lysozyme A dry ligand-binding cavity in a solvated protein.A review about nothing: are apolar cavities in proteins really empty?Exploring structural and optical properties of fluorescent proteins by squeezing: modeling high-pressure effects on the mStrawberry and mCherry red fluorescent proteins.Pressure adaptation of 3-isopropylmalate dehydrogenase from an extremely piezophilic bacterium is attributed to a single amino acid substitution.Water in the polar and nonpolar cavities of the protein interleukin-1β.Using free energy of binding calculations to improve the accuracy of virtual screening predictions.Motifs for molecular recognition exploiting hydrophobic enclosure in protein-ligand binding Structure-relaxation mechanism for the response of T4 lysozyme cavity mutants to hydrostatic pressure Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes.Drying transition in the hydrophobic gate of the GLIC channel blocks ion conduction A self-consistent phase-field approach to implicit solvation of charged molecules with Poisson-Boltzmann electrostatics.Theoretical study of the partial molar volume change associated with the pressure-induced structural transition of ubiquitin.Hydrophobicity of protein surfaces: Separating geometry from chemistry An extended dynamical hydration shell around proteins.UV-radiation induced disruption of dry-cavities in human γD-crystallin results in decreased stability and faster unfolding.Photosynthetic diode: electron transport rectification by wetting the quinone cofactor.Bubbles, gating, and anesthetics in ion channels Static and dynamic correlations in water at hydrophobic interfaces Structural and thermodynamic characterization of T4 lysozyme mutants and the contribution of internal cavities to pressure denaturation.New methodologies at PF AR-NW12A: the implementation of high-pressure macromolecular crystallography.Dewetting and hydrophobic interaction in physical and biological systems.Computations of standard binding free energies with molecular dynamics simulations.Mechanism of deep-sea fish α-actin pressure tolerance investigated by molecular dynamics simulations.Dissecting the contributions of β-hairpin tyrosine pairs to the folding and stability of long-lived human γD-crystallins.

P2860

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P2860

Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation.

http://www.wikidata.org/entity/Q34133399

description

2005 nî lūn-bûn

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Proceedings of the National Academy of Sciences of the United States of America

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Cooperative water filling of a ...... rystallography and simulation.

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Brian W Matthews

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Marcus D Collins

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Michael L Quillin

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Sol M Gruner

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P2860

Comparison of simple potential functions for simulating liquid water

The catalytic pathway of cytochrome p450cam at atomic resolution

Size versus polarizability in protein-ligand interactions: binding of noble gases within engineered cavities in phage T4 lysozyme

Probing substates in sperm whale myoglobin using high-pressure crystallography

Crystallographic structures of the M and N intermediates of bacteriorhodopsin: assembly of a hydrogen-bonded chain of water molecules between Asp-96 and the retinal Schiff base

Crystal structure of hen egg-white lysozyme at a hydrostatic pressure of 1000 atmospheres

Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4 lysozyme have different structural and thermodynamic consequences

Structural and energetic responses to cavity-creating mutations in hydrophobic cores: observation of a buried water molecule and the hydrophilic nature of such hydrophobic cavities

Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography

Detection, delineation, measurement and display of cavities in macromolecular structures

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