SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data. - Wikidata - awgldk - TriplyDB

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data.

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data.

http://www.wikidata.org/entity/Q34147120

about

Global analyses of Ceratocystis cacaofunesta mitochondria: from genome to proteome A survey of the sorghum transcriptome using single-molecule long reads.Vials: Visualizing Alternative Splicing of Genes.Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation Genomic, Transcriptomic and Proteomic Analysis Provide Insights into the Cold Adaptation Mechanism of the Obligate Psychrophilic Fungus Mrakia psychrophila ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.QUANTIFYING ALTERNATIVE SPLICING FROM PAIRED-END RNA-SEQUENCING DATA Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs.spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.De novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species.SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data Detection and visualization of differential splicing in RNA-Seq data with JunctionSeq Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq Changes in RNA Splicing in Developing Soybean (Glycine max) Embryos.Genome-guided transcriptome assembly in the age of next-generation sequencing A change-point model for identifying 3'UTR switching by next-generation RNA sequencing Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura.SplicingCompass: differential splicing detection using RNA-seq data.Genome-wide characterization of intergenic polyadenylation sites redefines gene spaces in Arabidopsis thaliana.Revealing Missing Human Protein Isoforms Based on Ab Initio Prediction, RNA-seq and Proteomics iCLIP identifies novel roles for SAFB1 in regulating RNA processing and neuronal function Deciphering the plant splicing code: experimental and computational approaches for predicting alternative splicing and splicing regulatory elements Transcriptome Dynamics during Maize Endosperm Development.Sequencing, De novo Assembly, Functional Annotation and Analysis of Phyllanthus amarus Leaf Transcriptome Using the Illumina Platform Tissue-specific expression, developmentally and spatially regulated alternative splicing, and protein subcellular localization of OsLpa rice Review: Alternative Splicing (AS) of Genes As An Approach for Generating Protein Complexity.CLASS2: accurate and efficient splice variant annotation from RNA-seq reads.Detecting and comparing non-coding RNAs in the high-throughput era Characterization of a Genomic Region under Selection in Cultivated Carrot (Daucus carota subsp. sativus) Reveals a Candidate Domestication Gene.Complexity of the alternative splicing landscape in plants.A survey of computational methods in transcriptome-wide alternative splicing analysis Evaluating approaches to find exon chains based on long reads.A transcriptome atlas of rabbit revealed by PacBio single-molecule long-read sequencing.Recognition memory-induced gene expression in the perirhinal cortex: A transcriptomic analysis.50/50 Expressional Odds of Retention Signifies the Distinction between Retained Introns and Constitutively Spliced Introns in Arabidopsis thaliana.ARSDA: A New Approach for Storing, Transmitting and Analyzing Transcriptomic Data.Exploring the relationship between intron retention and chromatin accessibility in plants.ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data.Isoform Sequencing and State-of-Art Applications for Unravelling Complexity of Plant Transcriptomes.SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.

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SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data.

http://www.wikidata.org/entity/Q34147120

description

2012 nî lūn-bûn

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2012 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2012 թվականի հունվարին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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SpliceGrapher: detecting patte ...... t of gene models and EST data.

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SpliceGrapher: detecting patte ...... t of gene models and EST data.

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Anireddy Sn Reddy

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Julie Thomas

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Mark F Rogers

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Mapping and quantifying mammalian transcriptomes by RNA-Seq

RNA-Seq: a revolutionary tool for transcriptomics

NCBI GEO: archive for functional genomics data sets--10 years on

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Mapping short DNA sequencing reads and calling variants using mapping quality scores

TopHat: discovering splice junctions with RNA-Seq

Different levels of alternative splicing among eukaryotes

BLAT--the BLAST-like alignment tool

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