Intrinsic conformational properties of deoxyribonucleosides: implicated role for cytosine in the equilibrium among the A, B, and Z forms of DNA
about
Convergence and reproducibility in molecular dynamics simulations of the DNA duplex d(GCACGAACGAACGAACGC)The structure of a stable intermediate in the A left-right-arrow B DNA helix transitionNMR Structures of (rGC U GA G GCU) 2 and (rGC G GA U GCU) 2 : Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs † , ‡Solution Structure of the Dickerson DNA Dodecamer Containing a Single RibonucleotideSequence-dependent B<-->A transition in DNA evaluated with dimeric and trimeric scales.Ecological and evolutionary significance of genomic GC content diversity in monocotsThe intrinsic mechanics of B-DNA in solution characterized by NMRSequence-specific ultrasonic cleavage of DNAIntrinsic flexibility of B-DNA: the experimental TRX scale.SSC: a tool for constructing libraries for systematic screening of conformers.Re-examination of the intrinsic, dynamic and hydration properties of phosphoramidate DNA.Development and current status of the CHARMM force field for nucleic acids.Intrinsic conformational energetics associated with the glycosyl torsion in DNA: a quantum mechanical study.Ab initio conformational analysis of nucleic acid components: intrinsic energetic contributions to nucleic acid structure and dynamics.Cold denaturation induces inversion of dipole and spin transfer in chiral peptide monolayers.Conserved patterns in backbone torsional changes allow for single base flipping from duplex DNA with minimal distortion of the double helixImprovement of DNA and RNA Sugar Pucker Profiles from Semiempirical Quantum Methods.The DNA and RNA sugar-phosphate backbone emerges as the key player. An overview of quantum-chemical, structural biology and simulation studies.Mediation of the A/B-DNA helix transition by G-tracts in the crystal structure of duplex CATGGGCCCATG.Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles.Additive CHARMM force field for naturally occurring modified ribonucleotides.The structure of DNA within cationic lipid/DNA complexes.The B- to A-DNA transition and the reorganization of solvent at the DNA surface.Cytosine ribose flexibility in DNA: a combined NMR 13C spin relaxation and molecular dynamics simulation study.Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium.All-atom polarizable force field for DNA based on the classical Drude oscillator modelProbing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations.Contribution of the intrinsic mechanical energy of the phosphodiester linkage to the relative stability of the A, BI, and BII forms of duplex DNA.Structural and energetic properties of the potential HIV-1 reverse transcriptase inhibitors d4A and d4G: a comprehensive theoretical investigation.Toward Improved Description of DNA Backbone: Revisiting Epsilon and Zeta Torsion Force Field ParametersStructure and dynamics of phosphate linkages and sugars in an abasic hexaloop RNA hairpin.Impact of geometry optimization on base-base stacking interaction energies in the canonical A- and B-forms of DNA.An ab initio theoretical study of electronic structure and properties of 2'-deoxyguanosine in gas phase and aqueous media.The intramolecular impact to the sequence specificity of B-->A transition: low energy conformational variations in AA/TT and GG/CC steps.Conformational analysis of canonical 2-deoxyribonucleotides. 1. Pyrimidine nucleotides.Conformational analysis of canonical 2-deoxyribonucleotides. 2. Purine nucleotides.Charges of phosphate groups. A role in stabilization of 2'-deoxyribonucleotides. A DFT investigation.Interaction of low-energy electrons with the purine bases, nucleosides, and nucleotides of DNA.Interaction of low-energy electrons with the pyrimidine bases and nucleosides of DNA.B-DNA helix stability in a solvent-free environment.
P2860
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P2860
Intrinsic conformational properties of deoxyribonucleosides: implicated role for cytosine in the equilibrium among the A, B, and Z forms of DNA
description
1999 nî lūn-bûn
@nan
1999 թուականի Յունիսին հրատարակուած գիտական յօդուած
@hyw
1999 թվականի հունիսին հրատարակված գիտական հոդված
@hy
1999年の論文
@ja
1999年学术文章
@wuu
1999年学术文章
@zh-cn
1999年学术文章
@zh-hans
1999年学术文章
@zh-my
1999年学术文章
@zh-sg
1999年學術文章
@yue
name
Intrinsic conformational prope ...... g the A, B, and Z forms of DNA
@ast
Intrinsic conformational prope ...... g the A, B, and Z forms of DNA
@en
Intrinsic conformational prope ...... g the A, B, and Z forms of DNA
@nl
type
label
Intrinsic conformational prope ...... g the A, B, and Z forms of DNA
@ast
Intrinsic conformational prope ...... g the A, B, and Z forms of DNA
@en
Intrinsic conformational prope ...... g the A, B, and Z forms of DNA
@nl
prefLabel
Intrinsic conformational prope ...... g the A, B, and Z forms of DNA
@ast
Intrinsic conformational prope ...... g the A, B, and Z forms of DNA
@en
Intrinsic conformational prope ...... g the A, B, and Z forms of DNA
@nl
P2860
P1433
P1476
Intrinsic conformational prope ...... g the A, B, and Z forms of DNA
@en
P2093
A D MacKerell
P2860
P304
P356
10.1016/S0006-3495(99)77472-2
P407
P577
1999-06-01T00:00:00Z