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Genome-wide detection of novel regulatory RNAs in E. coli

Genome-wide detection of novel regulatory RNAs in E. coli

http://www.wikidata.org/entity/Q34191891

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Post-transcriptional control of the Escherichia coli PhoQ-PhoP two-component system by multiple sRNAs involves a novel pairing region of GcvB dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42 The Tip of the Iceberg: On the Roles of Regulatory Small RNAs in the Virulence of Enterohemorrhagic and Enteropathogenic Escherichia coli Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory function Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation Bioinformatics of prokaryotic RNAs Deep sequencing-based identification of small regulatory RNAs in Synechocystis sp. PCC 6803 Inferring the relation between transcriptional and posttranscriptional regulation from expression compendia Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique Computational analysis of bacterial RNA-Seq data Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213 The TamB ortholog of Borrelia burgdorferi interacts with the β-barrel assembly machine (BAM) complex protein BamA In silico study of peptide inhibitors against BACE 1.EcoBrowser: a web-based tool for visualizing transcriptome data of Escherichia coli.Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances.A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium.Ex uno plures: clonal reinforcement drives evolution of a simple microbial community Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli.Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli Control of gene expression at a bacterial leader RNA, the agn43 gene encoding outer membrane protein Ag43 of Escherichia coli.HrrF is the Fur-regulated small RNA in nontypeable Haemophilus influenzae.Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation.An in silico model for identification of small RNAs in whole bacterial genomes: characterization of antisense RNAs in pathogenic Escherichia coli and Streptococcus agalactiae strains Approaches to querying bacterial genomes with transposon-insertion sequencing Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling Identification of novel small RNAs and characterization of the 6S RNA of Coxiella burnetii.Ms1, a novel sRNA interacting with the RNA polymerase core in mycobacteria.A New Noncoding RNA Arranges Bacterial Chromosome Organization.Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli.Transcriptome landscape of Lactococcus lactis reveals many novel RNAs including a small regulatory RNA involved in carbon uptake and metabolism.How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?Protection against deleterious nitrogen compounds: role of σS-dependent small RNAs encoded adjacent to sdiA.Comparative analysis of non-coding RNAs in the antibiotic-producing Streptomyces bacteria.Transcriptional analysis of Deinococcus radiodurans reveals novel small RNAs that are differentially expressed under ionizing radiation.Genome rearrangements can make and break small RNA genes Genome-wide identification of small RNAs in Bifidobacterium animalis subsp. lactis KLDS 2.0603 and their regulation role in the adaption to gastrointestinal environment Systematic analysis of the role of bacterial Hfq-interacting sRNAs in the response to antibiotics.Reduced mRNA secondary-structure stability near the start codon indicates functional genes in prokaryotes Metatranscriptomic analysis of microbes in an Oceanfront deep-subsurface hot spring reveals novel small RNAs and type-specific tRNA degradation.Evolutionary dynamics of small RNAs in 27 Escherichia coli and Shigella genomes.

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P2860

Genome-wide detection of novel regulatory RNAs in E. coli

http://www.wikidata.org/entity/Q34191891

description

2011 nî lūn-bûn

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2011 թուականի Յունիսին հրատարակուած գիտական յօդուած

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2011 թվականի հունիսին հրատարակված գիտական հոդված

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2011年の論文

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年學術文章

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name

Genome-wide detection of novel regulatory RNAs in E. coli

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Genome-wide detection of novel regulatory RNAs in E. coli

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Genome-wide detection of novel regulatory RNAs in E. coli

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type

label

Genome-wide detection of novel regulatory RNAs in E. coli

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Genome-wide detection of novel regulatory RNAs in E. coli

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Genome-wide detection of novel regulatory RNAs in E. coli

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prefLabel

Genome-wide detection of novel regulatory RNAs in E. coli

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Genome-wide detection of novel regulatory RNAs in E. coli

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Genome-wide detection of novel regulatory RNAs in E. coli

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Genome Research

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Genome-wide detection of novel regulatory RNAs in E. coli

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P2093

Eduardo A Groisman

http://www.w3.org/2001/XMLSchema#string

Howard Ochman

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Rahul Raghavan

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P2860

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

The distributions, mechanisms, and structures of metabolite-binding riboswitches

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

EcoGene: a genome sequence database for Escherichia coli K-12.

A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

An mRNA structure that controls gene expression by binding FMN

Hfq is necessary for regulation by the untranslated RNA DsrA

The pleiotropic two-component regulatory system PhoP-PhoQ

Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli

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1487-1497

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scholarly article

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10.1101/GR.119370.110

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9

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21

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51212314

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Escherichia coli

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3166833

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