Grinder: a versatile amplicon and shotgun sequence simulator
about
Metagenomics: Retrospect and Prospects in High Throughput AgeBest practices for evaluating single nucleotide variant calling methods for microbial genomicsThe utility of DNA metabarcoding for studying the response of arthropod diversity and composition to land-use change in the tropicsBOTUX: bayesian-like operational taxonomic unit examiner.Crass: identification and reconstruction of CRISPR from unassembled metagenomic dataUnraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations.Alignment-free visualization of metagenomic data by nonlinear dimension reduction.Enhancing the detection of barcoded reads in high throughput DNA sequencing data by controlling the false discovery rate.FASTQSim: platform-independent data characterization and in silico read generation for NGS datasets.MICCA: a complete and accurate software for taxonomic profiling of metagenomic data.A comparison of tools for the simulation of genomic next-generation sequencing data.Beyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis.Improved inference of taxonomic richness from environmental DNAROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscoresAccurate viral population assembly from ultra-deep sequencing data.MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing.PBSIM: PacBio reads simulator--toward accurate genome assembly.WGSQuikr: fast whole-genome shotgun metagenomic classification.A better sequence-read simulator program for metagenomicsAverage genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiomeViQuaS: an improved reconstruction pipeline for viral quasispecies spectra generated by next-generation sequencing.Evaluation of viral genome assembly and diversity estimation in deep metagenomes.GenomePeek-an online tool for prokaryotic genome and metagenome analysis.ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition.Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis.Metabarcoding of Fecal Samples to Determine Herbivore Diets: A Case Study of the Endangered Pacific Pocket Mouse.MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing.Assessment of Common and Emerging Bioinformatics Pipelines for Targeted MetagenomicsA fast and robust protocol for metataxonomic analysis using RNAseq data.Circulating microbial RNA and health.Real time metagenomics: using k-mers to annotate metagenomesReference-independent comparative metagenomics using cross-assembly: crAss.Large-scale machine learning for metagenomics sequence classification.Immunoglobulin Classification Using the Colored Antibody Graph.Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses.Healthy human gut phageome.Strain/species identification in metagenomes using genome-specific markers.Inference with viral quasispecies diversity indices: clonal and NGS approaches.DUDE-Seq: Fast, flexible, and robust denoising for targeted amplicon sequencing
P2860
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P2860
Grinder: a versatile amplicon and shotgun sequence simulator
description
2012 nî lūn-bûn
@nan
2012 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2012 թվականի մարտին հրատարակված գիտական հոդված
@hy
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
name
Grinder: a versatile amplicon and shotgun sequence simulator
@ast
Grinder: a versatile amplicon and shotgun sequence simulator
@en
Grinder: a versatile amplicon and shotgun sequence simulator
@nl
type
label
Grinder: a versatile amplicon and shotgun sequence simulator
@ast
Grinder: a versatile amplicon and shotgun sequence simulator
@en
Grinder: a versatile amplicon and shotgun sequence simulator
@nl
prefLabel
Grinder: a versatile amplicon and shotgun sequence simulator
@ast
Grinder: a versatile amplicon and shotgun sequence simulator
@en
Grinder: a versatile amplicon and shotgun sequence simulator
@nl
P2860
P50
P356
P1476
Grinder: a versatile amplicon and shotgun sequence simulator
@en
P2093
Dana Willner
Florent E Angly
P2860
P356
10.1093/NAR/GKS251
P407
P577
2012-03-19T00:00:00Z