Evaluation of normalization methods in mammalian microRNA-Seq data. - Wikidata - awgldk - TriplyDB

Evaluation of normalization methods in mammalian microRNA-Seq data.

Evaluation of normalization methods in mammalian microRNA-Seq data.

http://www.wikidata.org/entity/Q34244842

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Advanced Applications of RNA Sequencing and Challenges TGF-β/Smad2/3 signaling directly regulates several miRNAs in mouse ES cells and early embryos miRNAs differentially expressed by next-generation sequencing in cord blood buffy coat samples of boys and girls TCC: an R package for comparing tag count data with robust normalization strategies.iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq.QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing.Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization.Optimization of miRNA-seq data preprocessing.quantro: a data-driven approach to guide the choice of an appropriate normalization method Evaluation of methods for differential expression analysis on multi-group RNA-seq count data.iSRAP - a one-touch research tool for rapid profiling of small RNA-seq data.Incorporation of subject-level covariates in quantile normalization of miRNA data.Considerations and complications of mapping small RNA high-throughput data to transposable elements The miRNAome of the postpartum dairy cow liver in negative energy balance MicroRNA regulation of bovine monocyte inflammatory and metabolic networks in an in vivo infection model.Identification of tubular injury microRNA biomarkers in urine: comparison of next-generation sequencing and qPCR-based profiling platforms Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection.The importance of study design for detecting differentially abundant features in high-throughput experiments.RNA sequencing identifies specific PIWI-interacting small non-coding RNA expression patterns in breast cancer Sex-biased expression of microRNAs in Schistosoma mansoni MicroRNAs: new players in IBD.MicroRNA expression profiles from eggs of different qualities associated with post-ovulatory ageing in rainbow trout (Oncorhynchus mykiss).Altered microRNA expression in bovine skeletal muscle with age.Cross Platform Standardisation of an Experimental Pipeline for Use in the Identification of Dysregulated Human Circulating MiRNAs.Systematic Review of Micro-RNA Expression in Pre-Eclampsia Identifies a Number of Common Pathways Associated with the Disease Identification of Mitochondrial Genome-Encoded Small RNAs Related to Egg Deterioration Caused by Postovulatory Aging in Rainbow Trout.High Throughput Sequencing of Extracellular RNA from Human Plasma.A fuzzy method for RNA-Seq differential expression analysis in presence of multireads The use of miRNA microarrays for the analysis of cancer samples with global miRNA decrease miRNA Profile in Three Different Normal Human Ocular Tissues by miRNA-Seq.Circulating microRNAs as Potential Biomarkers of Infectious Disease.microRNAs and the mammary gland: A new understanding of gene expression.The validity of circulating microRNAs in oncology: five years of challenges and contradictions.Androgen receptor-regulated miRNA-193a-3p targets AJUBA to promote prostate cancer cell migration.Urinary MicroRNA as Biomarker in Renal Transplantation.Threshold-seq: a tool for determining the threshold in short RNA-seq datasets.Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging.Challenges in using circulating miRNAs as cancer biomarkers.miRNA-Seq normalization comparisons need improvement The poor performance of TMM on microRNA-Seq.

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P2860

Evaluation of normalization methods in mammalian microRNA-Seq data.

http://www.wikidata.org/entity/Q34244842

description

2012 nî lūn-bûn

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2012 թուականի Ապրիլին հրատարակուած գիտական յօդուած

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2012 թվականի ապրիլին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

Evaluation of normalization methods in mammalian microRNA-Seq data.

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Evaluation of normalization methods in mammalian microRNA-Seq data.

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Evaluation of normalization methods in mammalian microRNA-Seq data.

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type

label

Evaluation of normalization methods in mammalian microRNA-Seq data.

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Evaluation of normalization methods in mammalian microRNA-Seq data.

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Evaluation of normalization methods in mammalian microRNA-Seq data.

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prefLabel

Evaluation of normalization methods in mammalian microRNA-Seq data.

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Evaluation of normalization methods in mammalian microRNA-Seq data.

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Evaluation of normalization methods in mammalian microRNA-Seq data.

@nl

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Evaluation of normalization methods in mammalian microRNA-Seq data.

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Lana Xia Garmire

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Shankar Subramaniam

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P2860

Transcript length bias in RNA-seq data confounds systems biology

Differential expression analysis for sequence count data

microRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder

A scaling normalization method for differential expression analysis of RNA-seq data

Cluster analysis and display of genome-wide expression patterns

Expression profiling of microRNAs by deep sequencing

The impact of microRNAs on protein output

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

MicroRNAs: genomics, biogenesis, mechanism, and function

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10.1261/RNA.030916.111

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