Computational approaches for RNA energy parameter estimation
about
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programmingComputational analysis of noncoding RNAsProgress and challenges for chemical probing of RNA structure inside living cellsProbing hybridization parameters from microarray experiments: nearest-neighbor model and beyondDirect updating of an RNA base-pairing probability matrix with marginal probability constraintsRtips: fast and accurate tools for RNA 2D structure prediction using integer programmingA range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and moreEnsemble-based prediction of RNA secondary structures.Pareto optimization in algebraic dynamic programmingImproved free energy parameters for RNA pseudoknotted secondary structure prediction.A sensitivity analysis of RNA folding nearest neighbor parameters identifies a subset of free energy parameters with the greatest impact on RNA secondary structure prediction.Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure predictionAnalysis of energy-based algorithms for RNA secondary structure prediction.DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition.Evaluating the effect of disturbed ensemble distributions on SCFG based statistical sampling of RNA secondary structures.CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequencesTwo accurate sequence, structure, and phylogenetic template-based RNA alignment systemsStatistical potentials for hairpin and internal loops improve the accuracy of the predicted RNA structure.A classification of bioinformatics algorithms from the viewpoint of maximizing expected accuracy (MEA)Predicting kissing interactions in microRNA-target complex and assessment of microRNA activity.Visualizing RNA base-pairing probabilities with RNAbow diagramsThermodynamic stabilities of three-way junction nanomotifs in prohead RNA.Physics-based RNA structure prediction.StreAM-[Formula: see text]: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs.RIblast: An ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approach.Faster algorithms for RNA-folding using the Four-Russians method.Improved measurements of RNA structure conservation with generalized centroid estimators.The RNA Newton polytope and learnability of energy parameters.The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective.A folding algorithm for extended RNA secondary structures.You tell Carl that some of my best friends are Eukaryotes: Carl R. Woese (1928–2012).Riboswitching with ciprofloxacin-development and characterization of a novel RNA regulator.Secondary Structure Prediction of Single Sequences Using RNAstructure.Improving RNA nearest neighbor parameters for helices by going beyond the two-state model.bpRNA: large-scale automated annotation and analysis of RNA secondary structure.Research on folding diversity in statistical learning methods for RNA secondary structure prediction.
P2860
Q24611355-83D0A5C3-0DC2-43B9-BB73-C7D4DE3D9DC7Q27014185-AECF2AD9-46C1-4D1B-B7E1-3FEC5C96DDB3Q27691278-9940337E-EB42-41F1-866C-C8FE010EDE46Q28267999-4C14263E-35C9-4819-AD49-2378C8BB5152Q28710432-29D8F4A8-274B-46CE-A374-12D2128CA7B7Q28727285-BC1D181F-9276-4348-8A6C-AF01637FEFECQ28732450-6D7F5FC3-901E-4246-B16F-6E282CFED0E6Q30543368-071D470B-393E-4FBA-A9DC-A2EF3ED70962Q30656763-B03860F4-A67C-4D0A-AA8E-300EA592548FQ33572952-D1E57172-27B3-4FDB-88C7-0BA8552668A5Q33741153-CD0583C3-BA48-4ED2-AB14-D04EEA56CADAQ34066468-1BB5CE0F-EABB-4D9E-A1BD-1E3AFD394305Q34148178-56FD0116-3E72-40B8-9643-6C7ACF203FE9Q34305656-323C85E0-CA46-4BAC-90C7-27CB773F7382Q34331063-5AAC82D7-C1DB-40E6-B38C-71CE51EDB5E6Q35075543-C44F0B00-4DF7-46C0-B677-B8201E67DD97Q35102047-2335622A-106B-4951-B69C-B075F3A0377EQ35623931-73642343-A6A1-4C29-959F-F0817D0C8A5CQ35928874-6CE5F505-F227-445F-989E-B325B01144D0Q36044864-2BC341B1-3158-43ED-86BC-C19B16D06AB4Q36915039-DD359940-422B-4D03-B6E1-2AC62367AF27Q37685647-9EC15EF1-3DF2-4721-A596-40505F0E6977Q38584091-FDE3750E-1AB3-4F13-BC0B-ACF263EDC1E7Q38749835-B424C2CB-F17B-4EC5-9358-B6F0B5E173E6Q38811058-351368A8-BFFA-4B05-9ED1-BE4B57BCE252Q38903368-8E775725-A924-4D65-A955-5D096BCA9B60Q40739179-CE6D4DE8-17EF-4743-BE98-07FF91C7EDC0Q41554563-E7DEC27F-E2A5-4A9E-9F9C-4DEE12F5C1AFQ41832836-5B2E09C8-CC06-4804-9BC4-85FE24E67971Q41856824-5425B35C-36AC-4684-8F0F-DAA6AA5C244CQ46547306-6A896EC7-6D3D-4452-8EA9-2E2DCEFFA2B4Q48532335-32B9F2F3-CB35-4E8F-8030-CEE5CA66F154Q53752236-866FD391-946A-44F7-B63F-C8E221AD0184Q55360771-7157C692-CE91-472E-ADE9-AD64B7356F46Q55488957-8D3DC409-33A2-4DA2-82D0-CBD1FCC145CEQ55513258-9906A343-7E2C-4DCD-8933-C06BB2C4C3DE
P2860
Computational approaches for RNA energy parameter estimation
description
2010 nî lūn-bûn
@nan
2010 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի հոտեմբերին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
Computational approaches for RNA energy parameter estimation
@ast
Computational approaches for RNA energy parameter estimation
@en
Computational approaches for RNA energy parameter estimation
@nl
type
label
Computational approaches for RNA energy parameter estimation
@ast
Computational approaches for RNA energy parameter estimation
@en
Computational approaches for RNA energy parameter estimation
@nl
prefLabel
Computational approaches for RNA energy parameter estimation
@ast
Computational approaches for RNA energy parameter estimation
@en
Computational approaches for RNA energy parameter estimation
@nl
P2093
P2860
P356
P1433
P1476
Computational approaches for RNA energy parameter estimation
@en
P2093
Anne Condon
David H Mathews
Kevin P Murphy
Mirela Andronescu
P2860
P304
P356
10.1261/RNA.1950510
P407
P577
2010-10-12T00:00:00Z