Assessment of transcript reconstruction methods for RNA-seq. - Wikidata - awgldk - TriplyDB

Assessment of transcript reconstruction methods for RNA-seq.

Assessment of transcript reconstruction methods for RNA-seq.

http://www.wikidata.org/entity/Q34382192

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The landscape of long noncoding RNAs in the human transcriptome Bulked sample analysis in genetics, genomics and crop improvement PacBio Sequencing and Its Applications Next-Generation Sequencing Approaches in Cancer: Where Have They Brought Us and Where Will They Take Us?Survey of Programs Used to Detect Alternative Splicing Isoforms from Deep Sequencing Data In Silico Molecular Testing in Myelodysplastic Syndromes for the Practicing Oncologist: Will the Progress Fulfill the Promise?A survey of the sorghum transcriptome using single-molecule long reads.Crowdsourcing biomedical research: leveraging communities as innovation engines A survey of best practices for RNA-seq data analysis Computational approaches towards understanding human long non-coding RNA biology Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism RNA Sequencing and Analysis Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome Proteogenomics: concepts, applications and computational strategies OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis Most highly expressed protein-coding genes have a single dominant isoform.A survey of software for genome-wide discovery of differential splicing in RNA-Seq data.eRNA: a graphic user interface-based tool optimized for large data analysis from high-throughput RNA sequencing.Hybrid sequencing and map finding (HySeMaFi): optional strategies for extensively deciphering gene splicing and expression in organisms without reference genome Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: statistical solutions to biological problems.WemIQ: an accurate and robust isoform quantification method for RNA-seq data.Letting the data speak for themselves: a fully Bayesian approach to transcriptome assembly.Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data.Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data NONCODE 2016: an informative and valuable data source of long non-coding RNAs.FRAMA: from RNA-seq data to annotated mRNA assemblies.NMFP: a non-negative matrix factorization based preselection method to increase accuracy of identifying mRNA isoforms from RNA-seq data.Prediction and Quantification of Splice Events from RNA-Seq Data Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human.Radiogenomic Analysis of Oncological Data: A Technical Survey.A Comprehensive Analysis of Alternative Splicing in Paleopolyploid Maize A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.Genome annotation for clinical genomic diagnostics: strengths and weaknesses Insights from Global Analyses of Long Noncoding RNAs in Breast Cancer HopBase: a unified resource for Humulus genomics Computational approaches for isoform detection and estimation: good and bad news.Defining a personal, allele-specific, and single-molecule long-read transcriptome.Functional networks of nucleocytoplasmic transport-related genes differentiate ischemic and dilated cardiomyopathies. A new therapeutic opportunity RNA sequencing: from tag-based profiling to resolving complete transcript structure.Identification of genetic variants associated with alternative splicing using sQTLseekeR.

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P2860

Assessment of transcript reconstruction methods for RNA-seq.

http://www.wikidata.org/entity/Q34382192

description

2013 nî lūn-bûn

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2013 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2013 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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name

Assessment of transcript reconstruction methods for RNA-seq.

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Assessment of transcript reconstruction methods for RNA-seq.

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Assessment of transcript reconstruction methods for RNA-seq.

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type

label

Assessment of transcript reconstruction methods for RNA-seq.

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Assessment of transcript reconstruction methods for RNA-seq.

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Assessment of transcript reconstruction methods for RNA-seq.

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prefLabel

Assessment of transcript reconstruction methods for RNA-seq.

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Assessment of transcript reconstruction methods for RNA-seq.

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Assessment of transcript reconstruction methods for RNA-seq.

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Assessment of transcript reconstruction methods for RNA-seq.

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RGASP Consortium

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Automated generation of heuristics for biological sequence comparison

EGASP: the human ENCODE Genome Annotation Assessment Project

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Scaffolding a Caenorhabditis nematode genome with RNA-seq

Mapping and quantifying mammalian transcriptomes by RNA-Seq

A large-scale analysis of mRNA polyadenylation of human and mouse genes

GENCODE: the reference human genome annotation for The ENCODE Project

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

TopHat: discovering splice junctions with RNA-Seq

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Roderic Guigó i Serra

Jennifer Harrow

Felix Kokocinski

Tamara Steijger

Pär G Engström

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