UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches. - Wikidata - awgldk - TriplyDB

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.

http://www.wikidata.org/entity/Q34447998

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Discovery of a Natural Microsporidian Pathogen with a Broad Tissue Tropism in Caenorhabditis elegans FFPred 3: feature-based function prediction for all Gene Ontology domains.Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes Structural and Functional Characterization of the Bacterial Type III Secretion Export Apparatus Identification, Functional Characterization, and Evolution of Terpene Synthases from a Basal Dicot.SAR11 bacteria linked to ocean anoxia and nitrogen loss.Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta.HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering.Protein sequence-similarity search acceleration using a heuristic algorithm with a sensitive matrix.Protein structure determination using metagenome sequence data.Protein Bioinformatics Databases and Resources.Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range.Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance.High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors.CABRA: Cluster and Annotate Blast Results Algorithm Insights into the innate immunome of actiniarians using a comparative genomic approach.Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders.Identification and evolutionary analysis of long non-coding RNAs in zebra finch.Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater.EigenTHREADER: Analogous protein fold recognition by efficient contact map threading.COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information.A TALE-inspired computational screen for proteins that contain approximate tandem repeats Computational clustering for viral reference proteomes.Natural protein sequences are more intrinsically disordered than random sequences De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure.PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases.HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1 GlycoMine(struct): a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features.Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment.Characterization of a male reproductive transcriptome for Peromyscus eremicus (Cactus mouse).Minimizing proteome redundancy in the UniProt Knowledgebase.UniProt: the universal protein knowledgebase ECOD: new developments in the evolutionary classification of domains.RNA-Seq of Guar (Cyamopsis tetragonoloba, L. Taub.) Leaves: De novo Transcriptome Assembly, Functional Annotation and Development of Genomic Resources.Improved topology prediction using the terminal hydrophobic helices rule.Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors.Uniclust databases of clustered and deeply annotated protein sequences and alignments.Peptidase specificity from the substrate cleavage collection in the MEROPS database and a tool to measure cleavage site conservation.Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment

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P2860

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.

http://www.wikidata.org/entity/Q34447998

description

2014 nî lūn-bûn

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2014 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2014 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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UniRef clusters: a comprehensi ...... sequence similarity searches.

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UniRef clusters: a comprehensi ...... sequence similarity searches.

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UniRef clusters: a comprehensi ...... sequence similarity searches.

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UniRef clusters: a comprehensi ...... sequence similarity searches.

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UniRef clusters: a comprehensi ...... sequence similarity searches.

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Cathy H Wu

http://www.w3.org/2001/XMLSchema#string

Hongzhan Huang

http://www.w3.org/2001/XMLSchema#string

Peter B McGarvey

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UniProt Consortium

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Yuqi Wang

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P2860

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee

Gene ontology: tool for the unification of biology

A computational screen for type I polyketide synthases in metagenomics shotgun data

The Pfam protein families database

InterPro in 2011: new developments in the family and domain prediction database

The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties

Basic local alignment search tool

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

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10.1093/BIOINFORMATICS/BTU739

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