OryzaExpress: an integrated database of gene expression networks and omics annotations in rice. - Wikidata - awgldk - TriplyDB

OryzaExpress: an integrated database of gene expression networks and omics annotations in rice.

OryzaExpress: an integrated database of gene expression networks and omics annotations in rice.

http://www.wikidata.org/entity/Q34566225

about

Molecular genetics, physiology and biology of self-incompatibility in Brassicaceae Learning from Co-expression Networks: Possibilities and Challenges Plant Omics Data Center: an integrated web repository for interspecies gene expression networks with NLP-based curation Reuse of public genome-wide gene expression data UniVIO: a multiple omics database with hormonome and transcriptome data from rice A new omics data resource of Pleurocybella porrigens for gene discovery ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants.Gene coexpression network analysis as a source of functional annotation for rice genes Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza Sativa and Other Plant Species.PlantExpress: A Database Integrating OryzaExpress and ArthaExpress for Single-species and Cross-species Gene Expression Network Analyses with Microarray-Based Transcriptome Data.Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.RapaNet: A Web Tool for the Co-Expression Analysis of Brassica rapa Genes Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays.Comprehensive functional analyses of expressed sequence tags in common wheat (Triticum aestivum).Transcriptome comparison and gene coexpression network analysis provide a systems view of citrus response to 'Candidatus Liberibacter asiaticus' infection.Identification and molecular characterization of tissue-preferred rice genes and their upstream regularly sequences on a genome-wide level.Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and rice Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining.OryzaGenome: Genome Diversity Database of Wild Oryza Species.RiceFREND: a platform for retrieving coexpressed gene networks in rice RiceXPro version 3.0: expanding the informatics resource for rice transcriptome.The plant ontology as a tool for comparative plant anatomy and genomic analyses Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.RiceSRTFDB: a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis.The Rice Oligonucleotide Array Database: an atlas of rice gene expression.Unlocking Triticeae genomics to sustainably feed the future Advances in omics and bioinformatics tools for systems analyses of plant functions.Co-expression and co-responses: within and beyond transcription.Current challenges and future potential of tomato breeding using omics approaches.Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops.TENOR: Database for Comprehensive mRNA-Seq Experiments in Rice.De novo transcriptome assembly of a fern, Lygodium japonicum, and a web resource database, Ljtrans DB.Grand Challenge: Accelerating Discovery through Technology Development.RiceMetaSys for salt and drought stress responsive genes in rice: a web interface for crop improvement.Genome Signature Difference between Deinococcus radiodurans and Thermus thermophilus.Structural, expression and interaction analysis of rice SKP1-like genes.RiceAntherNet: a gene co-expression network for identifying anther and pollen development genes.Integrated omics analysis of specialized metabolism in medicinal plants.Cytosolic glutamine synthetase1;2 is responsible for the primary assimilation of ammonium in rice roots.

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OryzaExpress: an integrated database of gene expression networks and omics annotations in rice.

http://www.wikidata.org/entity/Q34566225

description

2010 nî lūn-bûn

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2010 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

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2010 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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Plant and Cell Physiology

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Akifumi Shimizu

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Hiroko Tsuchida

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Kazuki Hamada

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Kazumi Sano

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Keita Suwabe

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Kentaro Yano

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Kohei Hongo

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Koji Yokoyama

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Makoto Matsuoka

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Masahiro Fujita

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P2860

Bioconductor: open software development for computational biology and bioinformatics

Gene ontology: tool for the unification of biology

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

KEGG Atlas mapping for global analysis of metabolic pathways

A new method for gene discovery in large-scale microarray data

Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy

NCBI GEO: archive for high-throughput functional genomic data

Discovery of meaningful associations in genomic data using partial correlation coefficients.

Global similarity and local divergence in human and mouse gene co-expression networks.

Functional analysis of three lily (Lilium longiflorum) APETALA1-like MADS box genes in regulating floral transition and formation.

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220-229

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10.1093/PCP/PCQ195

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2

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52

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21186175

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