Thermodynamic and kinetic modeling of transcriptional pausing - Wikidata - awgldk - TriplyDB

Thermodynamic and kinetic modeling of transcriptional pausing

Thermodynamic and kinetic modeling of transcriptional pausing

http://www.wikidata.org/entity/Q34574716

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Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution Active site opening and closure control translocation of multisubunit RNA polymerase Computational biology of RNA interactions Cooperative RNA polymerase molecules behavior on a stochastic sequence-dependent model for transcription elongation PyroHMMsnp: an SNP caller for Ion Torrent and 454 sequencing data.Molecular dynamics studies of the energetics of translocation in model T7 RNA polymerase elongation complexes.A statistical thermodynamic model for investigating the stability of DNA sequences from oligonucleotides to genomes.Fitting experimental transcription data with a comprehensive template-dependent modular kinetic model.Structural energetics of the adenine tract from an intrinsic transcription terminator.Detecting sequence dependent transcriptional pauses from RNA and protein number time series.Interactions between RNA polymerase and the "core recognition element" counteract pausing Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation.A unified model of transcription elongation: what have we learned from single-molecule experiments?Development of a "modular" scheme to describe the kinetics of transcript elongation by RNA polymerase A systems view of the protein expression process.Dissociation of halted T7 RNA polymerase elongation complexes proceeds via a forward-translocation mechanism Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases.Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila Sequence-specific thermodynamic properties of nucleic acids influence both transcriptional pausing and backtracking in yeast.A Two-Way Street: Regulatory Interplay between RNA Polymerase and Nascent RNA Structure.Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism Mechanism of sequence-specific pausing of bacterial RNA polymerase A look-ahead model for the elongation dynamics of transcription.RNA polymerase active center: the molecular engine of transcription.Molecular mechanisms of transcription through single-molecule experiments.Transcription termination factor rho can displace streptavidin from biotinylated RNA.Transcription elongation.DksA guards elongating RNA polymerase against ribosome-stalling-induced arrest.The Influence of Look-Ahead on the Error Rate of Transcription.Factor-independent transcription pausing caused by recognition of the RNA-DNA hybrid sequence.Thermodynamic modeling of variations in the rate of RNA chain elongation of E. coli rrn operons.Comparison of Pause Predictions of Two Sequence-Dependent Transcription Models.Nucleosomal elements that control the topography of the barrier to transcription.The origin of short transcriptional pauses Fluctuations, pauses, and backtracking in DNA transcription.RNA polymerase backtracking in gene regulation and genome instability.Tagetitoxin inhibits transcription by stabilizing pre-translocated state of the elongation complex.A traffic flow model for bio-polymerization processes.Traffic of interacting ribosomes: effects of single-machine mechanochemistry on protein synthesis.Reduction and Stability Analysis of a Transcription-Translation Model of RNA Polymerase.

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Thermodynamic and kinetic modeling of transcriptional pausing

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2006 nî lūn-bûn

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2006 թուականի Մարտին հրատարակուած գիտական յօդուած

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2006 թվականի մարտին հրատարակված գիտական հոդված

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2006年の論文

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2006年学术文章

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2006年学术文章

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2006年学术文章

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2006年学术文章

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2006年學術文章

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Thermodynamic and kinetic modeling of transcriptional pausing

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Thermodynamic and kinetic modeling of transcriptional pausing

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Thermodynamic and kinetic modeling of transcriptional pausing

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Thermodynamic and kinetic modeling of transcriptional pausing

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Thermodynamic and kinetic modeling of transcriptional pausing

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Thermodynamic and kinetic modeling of transcriptional pausing

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Thermodynamic and kinetic modeling of transcriptional pausing

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Thermodynamic and kinetic modeling of transcriptional pausing

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Thermodynamic and kinetic modeling of transcriptional pausing

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Proceedings of the National Academy of Sciences of the United States of America

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Thermodynamic and kinetic modeling of transcriptional pausing

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P2093

Andrei E Ruckenstein

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Anirvan M Sengupta

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Dáibhid O Maoiléidigh

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Vasisht R Tadigotla

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Vitaly Epshtein

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P2860

Direct observation of base-pair stepping by RNA polymerase

Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

Simultaneous, coincident optical trapping and single-molecule fluorescence

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

Structural organization of the RNA polymerase-promoter open complex.

RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II.

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex.

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Richard H. Ebright

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