Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae. - Wikidata - awgldk - TriplyDB

Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.

Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.

http://www.wikidata.org/entity/Q34591168

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Integrative approaches for finding modular structure in biological networks Computational approaches for understanding energy metabolism Quantitative and logic modelling of molecular and gene networks Network-based identification of biomarkers coexpressed with multiple pathways Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation Functional states of the genome-scale Escherichia coli transcriptional regulatory system Metabolic constraint-based refinement of transcriptional regulatory networks Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction Applications of genome-scale metabolic reconstructions.Reconstruction of biochemical networks in microorganisms TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks Proteomic and network analysis characterize stage-specific metabolism in Trypanosoma cruzi.Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1 Dynamic analysis of integrated signaling, metabolic, and regulatory networks.Predicting biological system objectives de novo from internal state measurements.Functional integration of a metabolic network model and expression data without arbitrary thresholding.Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach.BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data.Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis.The regulatory network of E. coli metabolism as a Boolean dynamical system exhibits both homeostasis and flexibility of response The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism.Genome-scale models of bacterial metabolism: reconstruction and applications.BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks Minimally perturbing a gene regulatory network to avoid a disease phenotype: the glioma network as a test case.Systems-biology dissection of eukaryotic cell growth An automated phenotype-driven approach (GeneForce) for refining metabolic and regulatory models.Harnessing nature's toolbox: regulatory elements for synthetic biology.Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data In silico identification of gene amplification targets for improvement of lycopene production.Expanding a dynamic flux balance model of yeast fermentation to genome-scale iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states.Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis.Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods Computational strategies for a system-level understanding of metabolism.Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology Metabolic networks in motion: 13C-based flux analysis Coordinated regulation of sulfur and phospholipid metabolism reflects the importance of methylation in the growth of yeast.Transcriptional regulation of protein complexes within and across species Avoiding the Enumeration of Infeasible Elementary Flux Modes by Including Transcriptional Regulatory Rules in the Enumeration Process Saves Computational Costs

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P2860

Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.

http://www.wikidata.org/entity/Q34591168

description

2006 nî lūn-bûn

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2006 թուականի Ապրիլին հրատարակուած գիտական յօդուած

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2006 թվականի ապրիլին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年论文

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Integrated analysis of regulat ...... s in Saccharomyces cerevisiae.

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Integrated analysis of regulat ...... s in Saccharomyces cerevisiae.

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Integrated analysis of regulat ...... s in Saccharomyces cerevisiae.

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Integrated analysis of regulat ...... s in Saccharomyces cerevisiae.

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Integrated analysis of regulat ...... s in Saccharomyces cerevisiae.

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Integrated analysis of regulat ...... s in Saccharomyces cerevisiae.

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Genome Research

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Integrated analysis of regulat ...... s in Saccharomyces cerevisiae.

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P2093

Baek-Seok Lee

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Markus J Herrgård

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Vasiliy Portnoy

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P2860

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

Sirt1 promotes fat mobilization in white adipocytes by repressing PPAR-gamma

YPD, PombePD and WormPD: model organism volumes of the BioKnowledge library, an integrated resource for protein information

Hap4p overexpression in glucose-grown Saccharomyces cerevisiae induces cells to enter a novel metabolic state

Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast

Functional profiling of the Saccharomyces cerevisiae genome

Exploring the metabolic and genetic control of gene expression on a genomic scale

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

Genomic expression programs in the response of yeast cells to environmental changes

Proteome survey reveals modularity of the yeast cell machinery.

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5

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16

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Bernhard Palsson

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Saccharomyces cerevisiae

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1457053

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