Comparative studies of copy number variation detection methods for next-generation sequencing technologies - Wikidata - awgldk - TriplyDB

Comparative studies of copy number variation detection methods for next-generation sequencing technologies

Comparative studies of copy number variation detection methods for next-generation sequencing technologies

http://www.wikidata.org/entity/Q34634689

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Detection of Genomic Structural Variants from Next-Generation Sequencing Data Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method ADaCGH2: parallelized analysis of (big) CNA data.Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data.CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data.Population clustering based on copy number variations detected from next generation sequencing data.A Sparse Model Based Detection of Copy Number Variations From Exome Sequencing Data SAAS-CNV: A Joint Segmentation Approach on Aggregated and Allele Specific Signals for the Identification of Somatic Copy Number Alterations with Next-Generation Sequencing Data.A new molecular signature method for prediction of driver cancer pathways from transcriptional data.Next Generation Sequencing Data and Proteogenomics.A global analysis of CNVs in swine using whole genome sequence data and association analysis with fatty acid composition and growth traits.Extensive Copy Number Variation in Fermentation-Related Genes Among Saccharomyces cerevisiae Wine Strains.Detection of common copy number variation with application to population clustering from next generation sequencing data.Common copy number variation detection from multiple sequenced samples High-throughput sequencing and copy number variation detection using formalin fixed embedded tissue in metastatic gastric cancer.ViVar: a comprehensive platform for the analysis and visualization of structural genomic variation CNV-TV: a robust method to discover copy number variation from short sequencing reads.Copy number variation analysis based on AluScan sequences Genomic and transcriptomic differences in community acquired methicillin resistant Staphylococcus aureus USA300 and USA400 strains.Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.CODOC: efficient access, analysis and compression of depth of coverage signals.Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection.Comparison of sequencing based CNV discovery methods using monozygotic twin quartets.Combined Targeted DNA Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using UNCseq and NGScopy, and RNA Sequencing Using UNCqeR for the Detection of Genetic Aberrations in NSCLC.cnvCurator: an interactive visualization and editing tool for somatic copy number variations.Divergence patterns of genic copy number variation in natural populations of the house mouse (Mus musculus domesticus) reveal three conserved genes with major population-specific expansions CNV analysis in the Lithuanian population.Genome-wide patterns of copy number variation in the Chinese yak genome Genetic Mutation Analysis of Parkinson's Disease Patients Using Multigene Next-Generation Sequencing Panels.Statistical Approach to Decreasing the Error Rate of Noninvasive Prenatal Aneuploid Detection caused by Maternal Copy Number Variation Sequential model selection-based segmentation to detect DNA copy number variation.Evaluation of calling algorithms for array-CGH.TruePrime is a novel method for whole-genome amplification from single cells based on TthPrimPol An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments Making headway with genetic diagnostics of intellectual disabilities.The '-omics' revolution and oesophageal adenocarcinoma.Whole-genome CNV analysis: advances in computational approaches Evaluation of three read-depth based CNV detection tools using whole-exome sequencing data A comprehensive assay for CFTR mutational analysis using next-generation sequencing.ENFORCING CO-EXPRESSION IN MULTIMODAL REGRESSION FRAMEWORK.

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Comparative studies of copy number variation detection methods for next-generation sequencing technologies

http://www.wikidata.org/entity/Q34634689

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Strong association of de novo copy number mutations with autism

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

Paired-end mapping reveals extensive structural variation in the human genome

Large recurrent microdeletions associated with schizophrenia

Global variation in copy number in the human genome

The Sequence Alignment/Map format and SAMtools

Detection of large-scale variation in the human genome

APP locus duplication causes autosomal dominant early-onset Alzheimer disease with cerebral amyloid angiopathy

CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

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