On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins
about
Accurate multiple sequence alignment of transmembrane proteins with PSI-CoffeeComputational modeling of membrane proteinsProton channel models filling the gap between experimental data and the structural rationaleInduced effects of sodium ions on dopaminergic G-protein coupled receptorsIdentification of the first sodium binding site of the phosphate cotransporter NaPi-IIa (SLC34A1)Ligand-induced movements of inner transmembrane helices of Glut1 revealed by chemical cross-linking of di-cysteine mutantsMolecular docking simulations provide insights in the substrate binding sites and possible substrates of the ABCC6 transporterA Structural Model of the Human α7 Nicotinic Receptor in an Open ConformationMapping Cholesterol Interaction Sites on Serotonin Transporter through Coarse-Grained Molecular DynamicsMPlot--a server to analyze and visualize tertiary structure contacts and geometrical features of helical membrane proteinsStructure alignment of membrane proteins: Accuracy of available tools and a consensus strategySimultaneous alignment and folding of protein sequencesRelation between sequence and structure in membrane proteins.Memoir: template-based structure prediction for membrane proteinsTransmembrane protein alignment and fold recognition based on predicted topologyModBase, a database of annotated comparative protein structure models and associated resources.Prediction of membrane protein structures with complex topologies using limited constraintsSequence-structure relationship study in all-α transmembrane proteins using an unsupervised learning approach.Repeat-swap homology modeling of secondary active transporters: updated protocol and prediction of elevator-type mechanismsStructural genomics target selection for the New York consortium on membrane protein structure.The New York Consortium on Membrane Protein Structure (NYCOMPS): a high-throughput platform for structural genomics of integral membrane proteins.Membrane protein native state discrimination by implicit membrane models.Model of the complex of Parathyroid hormone-2 receptor and Tuberoinfundibular peptide of 39 residuesModel-guided mutagenesis drives functional studies of human NHA2, implicated in hypertension.MEDELLER: homology-based coordinate generation for membrane proteinsIntegrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins.Conformational changes in dopamine transporter intracellular regions upon cocaine binding and dopamine translocationIncreasingly accurate dynamic molecular models of G-protein coupled receptor oligomers: Panacea or Pandora's box for novel drug discovery?Comparison of human solute carriersThe SLC2 (GLUT) family of membrane transporters.Modern homology modeling of G-protein coupled receptors: which structural template to use?Characterization of the Na⁺/H⁺ antiporter from Yersinia pestisVITAL NMR: using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy.Reconstructing a chloride-binding site in a bacterial neurotransmitter transporter homologue.A model-structure of a periplasm-facing state of the NhaA antiporter suggests the molecular underpinnings of pH-induced conformational changes.Structural genomics plucks high-hanging membrane proteins.Toward understanding the mechanism of action of the yeast multidrug resistance transporter Pdr5p: a molecular modeling study.Towards improved quality of GPCR models by usage of multiple templates and profile-profile comparisonAlignment of helical membrane protein sequences using AlignMeMRFalign: protein homology detection through alignment of Markov random fields.
P2860
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P2860
On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins
description
2006 nî lūn-bûn
@nan
2006 թուականի Ապրիլին հրատարակուած գիտական յօդուած
@hyw
2006 թվականի ապրիլին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
On the accuracy of homology mo ...... s applied to membrane proteins
@ast
On the accuracy of homology mo ...... s applied to membrane proteins
@en
On the accuracy of homology mo ...... s applied to membrane proteins
@nl
type
label
On the accuracy of homology mo ...... s applied to membrane proteins
@ast
On the accuracy of homology mo ...... s applied to membrane proteins
@en
On the accuracy of homology mo ...... s applied to membrane proteins
@nl
prefLabel
On the accuracy of homology mo ...... s applied to membrane proteins
@ast
On the accuracy of homology mo ...... s applied to membrane proteins
@en
On the accuracy of homology mo ...... s applied to membrane proteins
@nl
P2860
P1433
P1476
On the accuracy of homology mo ...... s applied to membrane proteins
@en
P2093
Barry Honig
Christopher L Tang
P2860
P304
P356
10.1529/BIOPHYSJ.106.082313
P407
P577
2006-04-28T00:00:00Z