Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery. - Wikidata - awgldk - TriplyDB

Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery.

Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery.

http://www.wikidata.org/entity/Q34850233

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Sequence effects of aminofluorene-modified DNA duplexes: thermodynamic and circular dichroism properties Recognition of Damaged DNA for Nucleotide Excision Repair: A Correlated Motion Mechanism with a Mismatched cis-syn Thymine Dimer Lesion.Base-displaced intercalation of the 2-amino-3-methylimidazo[4,5-f]quinolone N2-dG adduct in the NarI DNA recognition sequence Structural Basis for Bulky-Adduct DNA-Lesion Recognition by the Nucleotide Excision Repair Protein Rad14 Comparison of toxicogenomics and traditional approaches to inform mode of action and points of departure in human health risk assessment of benzo[a]pyrene in drinking water TP53 and lacZ mutagenesis induced by 3-nitrobenzanthrone in Xpa-deficient human TP53 knock-in mouse embryo fibroblasts Incorporation of 3-aminobenzanthrone into 2'-deoxyoligonucleotides and its impact on duplex stability The association between RAD23B Ala249Val polymorphism and cancer susceptibility: evidence from a meta-analysis Absolute configurations of DNA lesions determined by comparisons of experimental ECD and ORD spectra with DFT calculations Polycyclic aromatic hydrocarbons as skin carcinogens: comparison of benzo[a]pyrene, dibenzo[def,p]chrysene and three environmental mixtures in the FVB/N mouse Nucleotide excision repair efficiencies of bulky carcinogen-DNA adducts are governed by a balance between stabilizing and destabilizing interactions The human DNA repair factor XPC-HR23B distinguishes stereoisomeric benzo[a]pyrenyl-DNA lesions Differential nucleotide excision repair susceptibility of bulky DNA adducts in different sequence contexts: hierarchies of recognition signals Sequence variations in DNA repair gene XPC is associated with lung cancer risk in a Chinese population: a case-control study DNA interstrand crosslink repair in mammalian cells: step by step.Nucleotide Excision Repair Lesion-Recognition Protein Rad4 Captures a Pre-Flipped Partner Base in a Benzo[a]pyrene-Derived DNA Lesion: How Structure Impacts the Binding Pathway NMR and computational studies of stereoisomeric equine estrogen-derived DNA cytidine adducts in oligonucleotide duplexes: opposite orientations of diastereomeric forms Distant neighbor base sequence context effects in human nucleotide excision repair of a benzo[a]pyrene-derived DNA lesion.Base sequence context effects on nucleotide excision repair.Simulating structural and thermodynamic properties of carcinogen-damaged DNA.A bulky DNA lesion derived from a highly potent polycyclic aromatic tumorigen stabilizes nucleosome core particle structure.Formation and repair of tobacco carcinogen-derived bulky DNA adducts Effect of oxidatively damaged DNA on the active site preorganization during nucleotide incorporation in a high fidelity polymerase from Bacillus stearothermophilus.Structural and thermodynamic insight into Escherichia coli UvrABC-mediated incision of cluster diacetylaminofluorene adducts on the NarI sequence.Intercalative conformations of the 14R (+)- and 14S (-)-trans-anti-DB[a,l]P-N⁶-dA adducts: molecular modeling and MD simulations.Resistance of bulky DNA lesions to nucleotide excision repair can result from extensive aromatic lesion-base stacking interactions.Probing for DNA damage with β-hairpins: similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro Structural insights into the recognition of cisplatin and AAF-dG lesion by Rad14 (XPA)Lack of recognition by global-genome nucleotide excision repair accounts for the high mutagenicity and persistence of aristolactam-DNA adducts.Metal binding mediated conformational change of XPA protein:a potential cytotoxic mechanism of nickel in the nucleotide excision repair Molecular mechanisms of xeroderma pigmentosum (XP) proteins.Dynamic conformational heterogeneities of carcinogen-DNA adducts and their mutagenic relevance.Nucleotide excision repair of 2-acetylaminofluorene- and 2-aminofluorene-(C8)-guanine adducts: molecular dynamics simulations elucidate how lesion structure and base sequence context impact repair efficiencies The efficiencies of damage recognition and excision correlate with duplex destabilization induced by acetylaminofluorene adducts in human nucleotide excision repair.Unusual sequence effects on nucleotide excision repair of arylamine lesions: DNA bending/distortion as a primary recognition factor Adenine-DNA adducts derived from the highly tumorigenic Dibenzo[a,l]pyrene are resistant to nucleotide excision repair while guanine adducts are not New synthetic substrates of mammalian nucleotide excision repair system DNA adduct structure-function relationships: comparing solution with polymerase structures.The sequence dependence of human nucleotide excision repair efficiencies of benzo[a]pyrene-derived DNA lesions: insights into the structural factors that favor dual incisions Gene expression profiles in HPV-immortalized human cervical cells treated with the nicotine-derived carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone.

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Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery.

http://www.wikidata.org/entity/Q34850233

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2002 nî lūn-bûn

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2002 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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Thermodynamic and structural f ...... ide excision repair machinery.

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Thermodynamic and structural f ...... ide excision repair machinery.

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Thermodynamic and structural f ...... ide excision repair machinery.

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Thermodynamic and structural f ...... ide excision repair machinery.

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Thermodynamic and structural f ...... ide excision repair machinery.

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Thermodynamic and structural f ...... ide excision repair machinery.

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Thermodynamic and structural f ...... ide excision repair machinery.

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Thermodynamic and structural f ...... ide excision repair machinery.

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Thermodynamic and structural f ...... ide excision repair machinery.

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Dinshaw J Patel

http://www.w3.org/2001/XMLSchema#string

Hanspeter Naegeli

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Min Wu

http://www.w3.org/2001/XMLSchema#string

Nicholas E Geacintov

http://www.w3.org/2001/XMLSchema#string

Shixiang Yan

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Suse Broyde

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Tonko Buterin

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P2860

A more unified picture for the thermodynamics of nucleic acid duplex melting: a characterization by calorimetric and volumetric techniques.

NMR evidence for syn-anti interconversion of a trans opened (10R)-dA adduct of benzo[a]pyrene (7S,8R)-diol (9R,10S)-epoxide in a DNA duplex

Solution structure of a trans-opened (10S)-dA adduct of (+)-(7S,8R,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a fully complementary DNA duplex: evidence for a major syn conformation

NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10S adduct derived from trans addition of a deoxyadenosine N6-amino group to (+)-(7R,8S,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene: an unusual s

Adduction of the human N-ras codon 61 sequence with (-)-(7S,8R,9R,10S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a] pyrene: structural refinement of the intercalated SRSR(61,2) (-)-(7S,8R,9S,10R)-N6-[10-(7,8,9,10- tetrahydrobenzo[a]pyrenyl)]

Solution structure of an oligodeoxynucleotide containing the human N-ras codon 12 sequence refined from 1H NMR using molecular dynamics restrained by nuclear Overhauser effects

Solution structure of the minor conformer of a DNA duplex containing a dG mismatch opposite a benzo[a]pyrene diol epoxide/dA adduct: glycosidic rotation from syn to anti at the modified deoxyadenosine

Protein complexes in nucleotide excision repair

Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

Recognition of nonhybridizing base pairs during nucleotide excision repair of DNA

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202-210

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scholarly article

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10.1002/BIP.10239

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3

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65

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2002-11-01T00:00:00Z

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12228925

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