FiberDock: Flexible induced-fit backbone refinement in molecular docking. - Wikidata - awgldk - TriplyDB

FiberDock: Flexible induced-fit backbone refinement in molecular docking.

FiberDock: Flexible induced-fit backbone refinement in molecular docking.

http://www.wikidata.org/entity/Q34909306

about

Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics Comparative molecular docking analysis of cytoplasmic dynein light chain DYNLL1 with pilin to explore the molecular mechanism of pathogenesis caused by Pseudomonas aeruginosa PAO The structural pathway of interleukin 1 (IL-1) initiated signaling reveals mechanisms of oncogenic mutations and SNPs in inflammation and cancer The Mutational Landscape of the Oncogenic MZF1 SCAN Domain in Cancer.Protein structure prediction using a docking-based hierarchical folding scheme.Pre-existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteins MEGADOCK: an all-to-all protein-protein interaction prediction system using tertiary structure data.An interaction-motif-based scoring function for protein-ligand docking.Across-proteome modeling of dimer structures for the bottom-up assembly of protein-protein interaction networks.Scoring docking conformations using predicted protein interfaces.PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking.An integrated suite of fast docking algorithms.Intermolecular interactions of the malate synthase of Paracoccidioides spp The scoring of poses in protein-protein docking: current capabilities and future directions Highly precise protein-protein interaction prediction based on consensus between template-based and de novo docking methods.A conservation and biophysics guided stochastic approach to refining docked multimeric proteins.SymmRef: a flexible refinement method for symmetric multimers.Structural neighboring property for identifying protein-protein binding sites.Human proteome-scale structural modeling of E2-E3 interactions exploiting interface motifs.GTP-Dependent K-Ras Dimerization Enriching the human apoptosis pathway by predicting the structures of protein-protein complexes.A Structural View of Negative Regulation of the Toll-like Receptor-Mediated Inflammatory Pathway.Rapid Design of Knowledge-Based Scoring Potentials for Enrichment of Near-Native Geometries in Protein-Protein Docking.A method for integrative structure determination of protein-protein complexes.Structure-based in silico identification of ubiquitin-binding domains provides insights into the ALIX-V:ubiquitin complex and retrovirus budding Dissecting disease inheritance modes in a three-dimensional protein network challenges the "guilt-by-association" principle.GalaxyRefineComplex: Refinement of protein-protein complex model structures driven by interface repacking.Accurate prediction of the bound form of the Akt pleckstrin homology domain using normal mode analysis to explore structural flexibility A strategy based on protein-protein interface motifs may help in identifying drug off-targets.Accounting for large amplitude protein deformation during in silico macromolecular docking.Docking-based modeling of protein-protein interfaces for extensive structural and functional characterization of missense mutations.Enriching Traditional Protein-protein Interaction Networks with Alternative Conformations of Proteins.Rigid-Docking Approaches to Explore Protein-Protein Interaction Space.Pushing the Backbone in Protein-Protein Docking.Protein-protein interaction network prediction by using rigid-body docking tools: application to bacterial chemotaxis.SwarmDock and the use of normal modes in protein-protein docking.HopDock: a probabilistic search algorithm for decoy sampling in protein-protein docking.A machine learning approach for the prediction of protein surface loop flexibility.On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.

P2860

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P2860

FiberDock: Flexible induced-fit backbone refinement in molecular docking.

http://www.wikidata.org/entity/Q34909306

description

2010 nî lūn-bûn

@nan

2010 թուականի Մայիսին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի մայիսին հրատարակված գիտական հոդված

@hy

2010年の論文

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2010年論文

@yue

2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

@zh-mo

2010年論文

@zh-tw

2010年论文

@wuu

name

FiberDock: Flexible induced-fit backbone refinement in molecular docking.

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FiberDock: Flexible induced-fit backbone refinement in molecular docking.

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FiberDock: Flexible induced-fit backbone refinement in molecular docking.

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type

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FiberDock: Flexible induced-fit backbone refinement in molecular docking.

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FiberDock: Flexible induced-fit backbone refinement in molecular docking.

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FiberDock: Flexible induced-fit backbone refinement in molecular docking.

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FiberDock: Flexible induced-fit backbone refinement in molecular docking.

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FiberDock: Flexible induced-fit backbone refinement in molecular docking.

@en

FiberDock: Flexible induced-fit backbone refinement in molecular docking.

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FiberDock: Flexible induced-fit backbone refinement in molecular docking.

@en

P2093

Efrat Mashiach

http://www.w3.org/2001/XMLSchema#string

Haim J Wolfson

http://www.w3.org/2001/XMLSchema#string

P2860

Application of a Theory of Enzyme Specificity to Protein Synthesis

Refinement of docked protein-ligand and protein-DNA structures using low frequency normal mode amplitude optimization.

PatchDock and SymmDock: servers for rigid and symmetric docking.

Antibody multispecificity mediated by conformational diversity

All-atom empirical potential for molecular modeling and dynamics studies of proteins

UCSF Chimera--a visualization system for exploratory research and analysis

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

HingeProt: automated prediction of hinges in protein structures

Docking and scoring protein complexes: CAPRI 3rd Edition

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1503-1519

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scholarly article

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10.1002/PROT.22668

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6

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78

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2010-05-01T00:00:00Z

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20077569

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4290165

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