MHC genotyping of non-model organisms using next-generation sequencing: a new methodology to deal with artefacts and allelic dropout.
about
MHC-dependent mate choice is linked to a trace-amine-associated receptor gene in a mammalAMPLISAS: a web server for multilocus genotyping using next-generation amplicon sequencing data.Analysis of amplicon-based NGS data from neurological disease gene panels: a new method for allele drop-out management.Positive selection on MHC class II DRB and DQB genes in the bank vole (Myodes glareolus).De novo transcriptome assembly facilitates characterisation of fast-evolving gene families, MHC class I in the bank vole (Myodes glareolus).Retention of functional variation despite extreme genomic erosion: MHC allelic repertoires in the Lynx genus.Stepwise threshold clustering: a new method for genotyping MHC loci using next-generation sequencing technology.The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms.High intralocus variability and interlocus recombination promote immunological diversity in a minimal major histocompatibility system.MHC class II variation in a rare and ecological specialist mouse lemur reveals lower allelic richness and contrasting selection patterns compared to a generalist and widespread sympatric congenerMajor Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity.Intermediate number of major histocompatibility complex class IIB length variants relates to enlarged perivisceral fat deposits in the blunt-head cichlid Tropheus moorii.The Quantification of Representative Sequences pipeline for amplicon sequencing: case study on within-population ITS1 sequence variation in a microparasite infecting Daphnia.Spatial pattern of adaptive and neutral genetic diversity across different biomes in the lesser anteater (Tamandua tetradactyla)Sequence diversity between class I MHC loci of African native and introduced Bos taurus cattle in Theileria parva endemic regions: in silico peptide binding prediction identifies distinct functional clusters.Next-generation genotyping of hypervariable loci in many individuals of a non-model species: technical and theoretical implications.A novel RNAseq-assisted method for MHC class I genotyping in a non-model species applied to a lethal vaccination-induced alloimmune diseaseEvidence for selection maintaining MHC diversity in a rodent species despite strong density fluctuations.PCR Strategies for Complete Allele Calling in Multigene Families Using High-Throughput Sequencing Approaches.Egernia stokesii (gidgee skink) MHC I positively selected sites lack concordance with HLA peptide binding regions.Can MHC-assortative partner choice promote offspring diversity? A new combination of MHC-dependent behaviours among sexes in a highly successful invasive mammal.Very high MHC Class IIB diversity without spatial differentiation in the mediterranean population of greater Flamingos.Genes and Group Membership Predict Gidgee Skink (Egernia stokesii) Reproductive Pairs.Genomic variation in the porcine immunoglobulin lambda variable region.Large-scale genotyping of highly polymorphic loci by next-generation sequencing: how to overcome the challenges to reliably genotype individuals?Evaluating the adaptive potential of the European eel: is the immunogenetic status recovering?Rapid Identification of Major Histocompatibility Complex Class I Haplotypes Using Deep Sequencing in an Endangered Old World MonkeyMicrosatellite and major histocompatibility complex variation in an endangered rattlesnake, the Eastern Massasauga (Sistrurus catenatus).Extraordinary MHC class II B diversity in a non-passerine, wild bird: the Eurasian Coot Fulica atra (Aves: Rallidae).Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools.Critical review of NGS analyses for de novo genotyping multigene families.Testing genotyping strategies for ultra-deep sequencing of a co-amplifying gene family: MHC class I in a passerine bird.A quantitative and qualitative comparison of illumina MiSeq and 454 amplicon sequencing for genotyping the highly polymorphic major histocompatibility complex (MHC) in a non-model species.The effects of historical fragmentation on major histocompatibility complex class II β and microsatellite variation in the Aegean island reptile, Podarcis erhardii.Performance of the ForenSeqTM DNA Signature Prep kit on highly degraded samples.454 screening of individual MHC variation in an endemic island passerine.Characterization of major histocompatibility complex class I, and class II DRB loci of captive and wild Indian leopards (Panthera pardus fusca).Integrated computational prediction and experimental validation identifies promiscuous T cell epitopes in the proteome of Mycobacterium bovis.Characterization of MHC class II B polymorphism in multiple populations of wild gorillas using non-invasive samples and next-generation sequencing.MHC, parasites and antler development in red deer: no support for the Hamilton & Zuk hypothesis.
P2860
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P2860
MHC genotyping of non-model organisms using next-generation sequencing: a new methodology to deal with artefacts and allelic dropout.
description
2013 nî lūn-bûn
@nan
2013 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2013 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
name
MHC genotyping of non-model or ...... artefacts and allelic dropout.
@ast
MHC genotyping of non-model or ...... artefacts and allelic dropout.
@en
MHC genotyping of non-model or ...... artefacts and allelic dropout.
@nl
type
label
MHC genotyping of non-model or ...... artefacts and allelic dropout.
@ast
MHC genotyping of non-model or ...... artefacts and allelic dropout.
@en
MHC genotyping of non-model or ...... artefacts and allelic dropout.
@nl
prefLabel
MHC genotyping of non-model or ...... artefacts and allelic dropout.
@ast
MHC genotyping of non-model or ...... artefacts and allelic dropout.
@en
MHC genotyping of non-model or ...... artefacts and allelic dropout.
@nl
P2093
P2860
P356
P1433
P1476
MHC genotyping of non-model or ...... artefacts and allelic dropout.
@en
P2093
Alexandre Courtiol
Camila J Mazzoni
Simone Sommer
P2860
P2888
P356
10.1186/1471-2164-14-542
P407
P577
2013-08-09T00:00:00Z
P5875
P6179
1048391249