Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities. - Wikidata - awgldk - TriplyDB

Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities.

Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities.

http://www.wikidata.org/entity/Q34990348

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Considerations For Optimizing Microbiome Analysis Using a Marker Gene Redundancy, resilience, and host specificity of the ruminal microbiota: implications for engineering improved ruminal fermentations Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range Quantifying the biases in metagenome mining for realistic assessment of microbial ecology of naturally fermented foods.Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood.Studies on bacterial community composition are affected by the time and storage method of the rumen content.High-throughput Methods Redefine the Rumen Microbiome and Its Relationship with Nutrition and Metabolism.Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis.Bacterial communities in the rumen of Holstein heifers differ when fed orchardgrass as pasture vs. hay The microbes we eat: abundance and taxonomy of microbes consumed in a day's worth of meals for three diet types.Few highly abundant operational taxonomic units dominate within rumen methanogenic archaeal species in New Zealand sheep and cattle Evaluating variation in human gut microbiota profiles due to DNA extraction method and inter-subject differences.High-throughput DNA sequencing of the ruminal bacteria from moose (Alces alces) in Vermont, Alaska, and Norway.The giraffe (Giraffa camelopardalis) rumen microbiome.Oral microbiome composition changes in mouse models of colitis.Tracking down the sources of experimental contamination in microbiome studies.Comparison of the gut microbiota of people in France and Saudi Arabia.Ruminal Bacterial Community Composition in Dairy Cows Is Dynamic over the Course of Two Lactations and Correlates with Feed Efficiency Rapid changes in key ruminal microbial populations during the induction of and recovery from diet-induced milk fat depression in dairy cows.The Influence of the Autoimmunity-Associated Ancestral HLA Haplotype AH8.1 on the Human Gut Microbiota: A Cross-Sectional Study.Buccal swabbing as a noninvasive method to determine bacterial, archaeal, and eukaryotic microbial community structures in the rumen.Microbial populations and fermentation profiles in rumen liquid and solids of Holstein cows respond differently to dietary barley processing.Interactions between Hepatitis C Virus and the Human Apolipoprotein H Acute Phase Protein: A Tool for a Sensitive Detection of the Virus Does Dietary Mitigation of Enteric Methane Production Affect Rumen Function and Animal Productivity in Dairy Cows?Comparative Evaluation of DNA Extraction Methods from Feces of Multiple Host Species for Downstream Next-Generation Sequencing.An Improved Methodology to Overcome Key Issues in Human Fecal Metagenomic DNA Extraction.Bacterial community diversity associated with different levels of dietary nutrition in the rumen of sheep.New Insights into the Microbiota of the Svalbard Reindeer Rangifer tarandus platyrhynchus Evaluation of DNA extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions Effect of Freezing Conditions on Fecal Bacterial Composition in Pigs.Glycans affect DNA extraction and induce substantial differences in gut metagenomic studies Bovine Teat Microbiome Analysis Revealed Reduced Alpha Diversity and Significant Changes in Taxonomic Profiles in Quarters with a History of Mastitis Comparison of six commercial kits to extract bacterial chromosome and plasmid DNA for MiSeq sequencing.The ruminal microbiome associated with methane emissions from ruminant livestock.Comparison of rumen bacteria distribution in original rumen digesta, rumen liquid and solid fractions in lactating Holstein cows.Optimization of DNA extraction for advancing coral microbiota investigations.Effect of sugarcane fiber digestibility, conservation method and concentrate level on the ruminal ecosystem of beef cattle.

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Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities.

http://www.wikidata.org/entity/Q34990348

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2013 nî lūn-bûn

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2013 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2013 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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Effect of DNA extraction metho ...... p rumen microbial communities.

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Garry C Waghorn

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Michael Zethof

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Sandra Kittelmann

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Vahideh Heidarian Miri

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P2860

Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples

QIIME allows analysis of high-throughput community sequencing data

Structure of the archaeal community of the rumen

Basic local alignment search tool

A proposed taxonomy of anaerobic fungi (class neocallimastigomycetes) suitable for large-scale sequence-based community structure analysis

Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen

Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis.

High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol.

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